Abstract
Taxillus nigrans (Hance) Danser (Loranthaceae) is a widely distributed mistletoe species in low mountains, hills, and river basins in subtropical areas of southwestern China. The whole chloroplast (cp) genome sequence of T. nigrans has been characterized using Illumina pair-end sequencing. The complete cp genome was 121,419 bp in length, containing a large single copy (LSC) region of 70,181 bp and a small single copy (SSC) region of 6100 bp, which were separated by a pair of 22,569 bp inverted repeat (IRs) regions. The genome contained 106 genes, including 66 protein-coding genes, 28 tRNA genes, 8 ribosomal RNA genes, and 4 pseudogenes. The most of gene species occur as a single copy, while 15 gene species occur in double copies. The overall GC content of T. nigrans cp genome is 37.4%, while the corresponding values of the LSC, SSC, and IR regions are 34.8, 26.3, and 42.95%, respectively. Phylogenetic analysis revealed that T. nigrans is closely related to T. sutchuenensis, with strong support values.
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Claims 16
Claim · model-written summary
The complete chloroplast genome measured 121,419 bp.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- complete cp genomee1
- Value
- 121,419 bpe1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“The complete cp genome was 121,419 bp in length”
Claim · model-written summary
The large single copy region measured 70,181 bp.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- large single copy (LSC) regione1
- Value
- 70,181 bpe1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“a large single copy (LSC) region of 70,181 bp”
Claim · model-written summary
The small single copy region measured 6100 bp.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- small single copy (SSC) regione1
- Value
- 6100 bpe1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“a small single copy (SSC) region of 6100 bp”
Claim · model-written summary
Each inverted repeat region measured 22,569 bp.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- inverted repeat (IRs) regionse1
- Value
- 22,569 bpe1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“a pair of 22,569 bp inverted repeat (IRs) regions”
Claim · model-written summary
The genome contained 106 genes.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- genese1
- Value
- 106 genese1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“The genome contained 106 genes”
Claim · model-written summary
The genome contained 66 protein-coding genes.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- protein-coding genese1
- Value
- 66 protein-coding genese1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“66 protein-coding genes”
Claim · model-written summary
The genome contained 28 tRNA genes.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- tRNA genese1
- Value
- 28 tRNA genese1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“28 tRNA genes”
Claim · model-written summary
The genome contained 8 ribosomal RNA genes.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- ribosomal RNA genese1
- Value
- 8 ribosomal RNA genese1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“8 ribosomal RNA genes”
Claim · model-written summary
The genome contained 4 pseudogenes.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- pseudogenese1
- Value
- 4 pseudogenese1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“4 pseudogenes”
Claim · model-written summary
Most gene species occurred as single copies.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- gene species occur as a single copye1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“The most of gene species occur as a single copy”
Claim · model-written summary
Fifteen gene species occurred in double copies.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- gene species occur in double copiese1
- Value
- 15 gene speciese1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“15 gene species occur in double copies”
Claim · model-written summary
Overall chloroplast genome GC content was 37.4%.
- Taxon
- T. nigransTaxillus nigranse0
- Outcome
- GC content of T. nigrans cp genomee0
- Value
- 37.4%e0
Verbatim
e0“The overall GC content of T. nigrans cp genome is 37.4%”
Claim · model-written summary
The LSC GC content was 34.8%.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- LSCe1
- Value
- 34.8e1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“the corresponding values of the LSC, SSC, and IR regions are 34.8, 26.3, and 42.95%, respectively”
Claim · model-written summary
The SSC GC content was 26.3%.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- SSCe1
- Value
- 26.3e1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“the corresponding values of the LSC, SSC, and IR regions are 34.8, 26.3, and 42.95%, respectively”
Claim · model-written summary
The IR GC content was 42.95%.
- Taxon
- Taxillus nigransTaxillus nigranse0
- Outcome
- IR regionse1
- Value
- 42.95%e1
Verbatim
e0“Taxillus nigrans (Hance) Danser”
e1“the corresponding values of the LSC, SSC, and IR regions are 34.8, 26.3, and 42.95%, respectively”
Claim · model-written summary
Phylogenetic analysis placed T. nigrans close to T. sutchuenensis with strong support.
- Taxon
- T. nigransTaxillus nigranse0
- Outcome
- closely related to T. sutchuenensise0
- Qualifier
- strong support valuese0
Verbatim
e0“Phylogenetic analysis revealed that T. nigrans is closely related to T. sutchuenensis, with strong support values”