Paper · 2019 · Journal of Integrative Agriculture

Rhizosphere soil bacterial community composition in soybean genotypes and feedback to soil P availability

Tao ZHOU; Li WANG; Yong-li DU; et al.

13
claims
24
verbatim quotes
17
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Soil with low phosphorus (P) availability and organic matter contents exists in large area of southwest of China, but some soybean genotypes still show well adaptations to this low yield farmland. However, to date, the underlying mechanisms of how soybean regulates soil P availability still remains unclear, like microbe-induced changes. The objective of the present study was to compare the differences of rhizosphere bacterial community composition between E311 and E109 in P-sufficiency (10.2 mg kg−1) and P-insufficiency (5.5 mg kg−1), respectively, which then feedback to soil P availability. In P-sufficiency, significant differences of the bacterial community composition were observed, with fast-growth bacterial phylum Proteobacteria, genus Dechloromonas, Pseudomonas, Massilia, and Propionibacterium that showed greater relative abundances in E311 compared to E109, while in P-insufficiency were not. A similar result was obtained that E311 and E109 were clustered together in P-insufficiency rather than in P-sufficiency by using principal component analysis and hierarchical clustering analysis. The quadratic relationships between bacterial diversity and soil P availability in rhizosphere were analyzed, confirming that bacterial diversity enhanced the soil P availability. Moreover, the high abundance of Pseudomonas and Massilia in the rhizosphere of E311 might increased the P availability. In the present study, the soybean E311 showed capability of shaping rhizosphere bacterial diversity, and subsequently, increasing soil P availability. This study provided a strategy for rhizosphere management through soybean genotype selection and breeding to increase P use efficiency, or upgrade middle or low yield farmland.

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Claims 13

Associationobservedoriginal resultmeasured

Claim · model-written summary

In phosphorus-sufficient soil, E311 had more Proteobacteria than E109.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
ProteobacteriaPseudomonadotae0symbiont
Outcome
relative abundancese0
Direction
greatere0
Comparator
E109e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“fast-growth bacterial phylum Proteobacteria, genus Dechloromonas, Pseudomonas, Massilia, and Propionibacterium that showed greater relative abundances in E311 compared to E109”

✓ located verbatim in the source · abstract, characters 700–875 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

In phosphorus-sufficient soil, E311 had more Dechloromonas than E109.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
DechloromonasDechloromonase0symbiont
Outcome
relative abundancese0
Direction
greatere0
Comparator
E109e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“genus Dechloromonas, Pseudomonas, Massilia, and Propionibacterium that showed greater relative abundances in E311 compared to E109”

✓ located verbatim in the source · abstract, characters 745–875 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

In phosphorus-sufficient soil, E311 had more Pseudomonas than E109.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
PseudomonasPseudomonase0symbiont
Outcome
relative abundancese0
Direction
greatere0
Comparator
E109e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Pseudomonas
Pseudomonas · Interactor · picture of the genus (one of its species)CDC · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Pseudomonas, Massilia, and Propionibacterium that showed greater relative abundances in E311 compared to E109”

✓ located verbatim in the source · abstract, characters 766–875 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

In phosphorus-sufficient soil, E311 had more Massilia than E109.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
MassiliaMassiliae0symbiont
Outcome
relative abundancese0
Direction
greatere0
Comparator
E109e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Massilia
Massilia · Interactor · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Massilia, and Propionibacterium that showed greater relative abundances in E311 compared to E109”

✓ located verbatim in the source · abstract, characters 779–875 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

In phosphorus-sufficient soil, E311 had more Propionibacterium than E109.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
PropionibacteriumPropionibacteriume0symbiont
Outcome
relative abundancese0
Direction
greatere0
Comparator
E109e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Propionibacterium
Propionibacterium · Interactor · picture of the genus (one of its species)CDC/Bobby Strong · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Propionibacterium that showed greater relative abundances in E311 compared to E109”

✓ located verbatim in the source · abstract, characters 793–875 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

This genotype difference in bacterial composition was absent under phosphorus insufficiency.

Taxon
soybeanGlycine maxt0
Outcome
P-insufficiencye0
Setting
P-insufficiencye0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“while in P-insufficiency were not.”

✓ located verbatim in the source · abstract, characters 877–911 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

E311 and E109 bacterial profiles clustered together in phosphorus-insufficient rather than phosphorus-sufficient soil.

Taxon
soybeanGlycine maxt0
Material
E311e0
Outcome
clustered togethere0
Comparator
P-sufficiencye0
Setting
P-insufficiencye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“E311 and E109 were clustered together in P-insufficiency rather than in P-sufficiency”

✓ located verbatim in the source · abstract, characters 947–1032 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Bacterial diversity had a quadratic relationship with rhizosphere phosphorus availability.

Taxon
soybeanGlycine maxt0
Interactor
bacteriale0symbiont
Outcome
soil P availability in rhizospheree0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“The quadratic relationships between bacterial diversity and soil P availability in rhizosphere were analyzed”

✓ located verbatim in the source · abstract, characters 1109–1217 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Bacterial diversity was interpreted to enhance soil phosphorus availability.

Taxon
soybeanGlycine maxt0
Interactor
bacteriale0symbiont
Outcome
soil P availabilitye0
Qualifier
bacterial diversitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“confirming that bacterial diversity enhanced the soil P availability.”

✓ located verbatim in the source · abstract, characters 1219–1288 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

High Pseudomonas abundance might increase phosphorus availability.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
PseudomonasPseudomonase0symbiont
Outcome
P availabilitye0
Qualifier
high abundancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Pseudomonas
Pseudomonas · Interactor · picture of the genus (one of its species)CDC · Public domain · Wikimedia Commons ↗

Verbatim

e0

“the high abundance of Pseudomonas and Massilia in the rhizosphere of E311 might increased the P availability.”

✓ located verbatim in the source · abstract, characters 1299–1408 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

High Massilia abundance might increase phosphorus availability.

Taxon
soybeanGlycine maxt0
Material
E311e0
Interactor
MassiliaMassiliae0symbiont
Outcome
P availabilitye0
Qualifier
high abundancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Massilia
Massilia · Interactor · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the high abundance of Pseudomonas and Massilia in the rhizosphere of E311 might increased the P availability.”

✓ located verbatim in the source · abstract, characters 1299–1408 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 52–59 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

E311 was described as shaping rhizosphere bacterial diversity and increasing phosphorus availability.

Taxon
soybeanGlycine maxe0
Material
E311e0
Outcome
soil P availabilitye0
Qualifier
shaping rhizosphere bacterial diversitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“the soybean E311 showed capability of shaping rhizosphere bacterial diversity, and subsequently, increasing soil P availability.”

✓ located verbatim in the source · abstract, characters 1431–1559 · show in text ↑
Recommendationobservedoriginal resultmeasured

Claim · model-written summary

The authors proposed soybean genotype selection and breeding to improve phosphorus use efficiency and low-yield farmland.

Taxon
soybeanGlycine maxe0
Outcome
soybean genotype selection and breeding to increase P use efficiencye0
Qualifier
middle or low yield farmlande0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“rhizosphere management through soybean genotype selection and breeding to increase P use efficiency, or upgrade middle or low yield farmland.”

✓ located verbatim in the source · abstract, characters 1595–1736 · show in text ↑