Paper · 2020 · Persoonia - Molecular Phylogeny and Evolution of Fungi

High diversity of Diaporthe species associated with pear shoot canker in China

Y.S. Guo; P.W. Crous; Q. Bai; et al.

6
claims
18
verbatim quotes
110
citations
3
research areas
✓
Open access · other-oa

Abstract

Species of Diaporthe (syn. Phomopsis ) are important endophytes, saprobes and pathogens, infecting a wide range of plants and resulting in important crop diseases. However, the species occurring on pear remain largely unresolved. In this study, a total of 453 Diaporthe isolates were obtained from branches of Pyrus plants (including P. bretschneideri , P. communis , P. pyrifolia and P. ussuriensis collected from 12 provinces in China) showing shoot canker symptoms. Phylogenetic analyses based on five loci (ITS, TEF , CAL , HIS , and TUB ) coupled with morphology of 113 representative isolates revealed that 19 Diaporthe species were isolated, representing 13 known species (including D. caryae , D. cercidis , D. citrichinensis , D. eres , D. fusicola , D. ganjae , D. hongkongensis , D. padina , D. pescicola , D. sojae , D. taoicola , D. unshiuensis and D. velutina ) and six new species described here as D. acuta , D. chongqingensis , D. fulvicolor , D. parvae , D. spinosa and D. zaobaisu . Although Koch's postulates confirmed all species to be pathogenic, a high degree of variation in aggressiveness was observed. Moreover, these species have a high diversity, plasticity, and prevalence related to the geographical location and pear species involved.

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Claims 6

Observationobservedoriginal resultmeasured

Claim · model-written summary

Nineteen Diaporthe species were isolated from cankered Pyrus branches.

Taxon
PyrusPyruse1
Interactor
DiaportheDiaporthee0pathogen
Outcome
19 Diaporthe species were isolatede0
Value
19e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pyrus
Pyrus · Taxon · picture of the genus (one of its species)JLPC · CC BY-SA 3.0 · Wikimedia Commons ↗
Diaporthe
Diaporthe · Interactor · picture of the genus (one of its species)Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“19 Diaporthe species were isolated”

✓ located verbatim in the source · abstract, characters 613–647 · show in text ↑
e1

“branches of Pyrus plants”

✓ located verbatim in the source · abstract, characters 298–322 · show in text ↑
t0

“pear shoot canker”

✓ located verbatim in the source · title, characters 52–69 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Thirteen known Diaporthe species were identified.

Taxon
PyrusPyruse2
Interactor
DiaportheDiaporthee1pathogen
Outcome
known speciese0
Value
13e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pyrus
Pyrus · Taxon · picture of the genus (one of its species)JLPC · CC BY-SA 3.0 · Wikimedia Commons ↗
Diaporthe
Diaporthe · Interactor · picture of the genus (one of its species)Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“13 known species”

✓ located verbatim in the source · abstract, characters 662–678 · show in text ↑
e1

“19 Diaporthe species were isolated”

✓ located verbatim in the source · abstract, characters 613–647 · show in text ↑
e2

“branches of Pyrus plants”

✓ located verbatim in the source · abstract, characters 298–322 · show in text ↑
Observationobservedoriginal resultbasis n/a

Claim · model-written summary

Six new Diaporthe species were described.

Taxon
PyrusPyruse1
Interactor
DiaportheDiaporthee2pathogen
Outcome
new species described heree0
Value
sixe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pyrus
Pyrus · Taxon · picture of the genus (one of its species)JLPC · CC BY-SA 3.0 · Wikimedia Commons ↗
Diaporthe
Diaporthe · Interactor · picture of the genus (one of its species)Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“six new species described here as D. acuta , D. chongqingensis , D. fulvicolor , D. parvae , D. spinosa and D. zaobaisu”

✓ located verbatim in the source · abstract, characters 880–999 · show in text ↑
e1

“branches of Pyrus plants”

✓ located verbatim in the source · abstract, characters 298–322 · show in text ↑
e2

“19 Diaporthe species were isolated”

✓ located verbatim in the source · abstract, characters 613–647 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Koch’s postulates confirmed all isolated species as pathogenic.

Taxon
PyrusPyruse1
Interactor
DiaportheDiaporthee2pathogen
Outcome
all species to be pathogenice0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pyrus
Pyrus · Taxon · picture of the genus (one of its species)JLPC · CC BY-SA 3.0 · Wikimedia Commons ↗
Diaporthe
Diaporthe · Interactor · picture of the genus (one of its species)Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Koch's postulates confirmed all species to be pathogenic”

✓ located verbatim in the source · abstract, characters 1011–1067 · show in text ↑
e1

“branches of Pyrus plants”

✓ located verbatim in the source · abstract, characters 298–322 · show in text ↑
e2

“19 Diaporthe species were isolated”

✓ located verbatim in the source · abstract, characters 613–647 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Diaporthe species varied greatly in aggressiveness.

Taxon
PyrusPyruse2
Interactor
DiaportheDiaporthee1pathogen
Outcome
variation in aggressivenesse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pyrus
Pyrus · Taxon · picture of the genus (one of its species)JLPC · CC BY-SA 3.0 · Wikimedia Commons ↗
Diaporthe
Diaporthe · Interactor · picture of the genus (one of its species)Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“a high degree of variation in aggressiveness was observed”

✓ located verbatim in the source · abstract, characters 1069–1126 · show in text ↑
e1

“19 Diaporthe species were isolated”

✓ located verbatim in the source · abstract, characters 613–647 · show in text ↑
e2

“branches of Pyrus plants”

✓ located verbatim in the source · abstract, characters 298–322 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Diaporthe diversity, plasticity and prevalence were related to location and pear species.

Taxon
PyrusPyruse2
Interactor
DiaportheDiaporthee1pathogen
Outcome
diversity, plasticity, and prevalencee0
Setting
geographical locatione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pyrus
Pyrus · Taxon · picture of the genus (one of its species)JLPC · CC BY-SA 3.0 · Wikimedia Commons ↗
Diaporthe
Diaporthe · Interactor · picture of the genus (one of its species)Clemson University - USDA Cooperative Extension Slide Series, Bugwood.org · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“these species have a high diversity, plasticity, and prevalence related to the geographical location and pear species involved”

✓ located verbatim in the source · abstract, characters 1138–1264 · show in text ↑
e1

“19 Diaporthe species were isolated”

✓ located verbatim in the source · abstract, characters 613–647 · show in text ↑
e2

“branches of Pyrus plants”

✓ located verbatim in the source · abstract, characters 298–322 · show in text ↑