Paper · 2020 · Microorganisms

Mining the Microbiome of Key Species from African Savanna Woodlands: Potential for Soil Health Improvement and Plant Growth Promotion

Ivete Sandra Maquia; Paula Fareleira; Isabel Videira e Castro; et al.

7
claims
14
verbatim quotes
14
citations
2
research areas
✓
Open access · cc-by

Abstract

(1) Aims: Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes. (2) Methods: Bacterial communities were identified through Illumina Miseq sequencing of the 16S rRNA gene amplicons, followed by culture dependent methods to isolate plant growth-promoting bacteria (PGPB). Plant growth-promoting traits of the cultivable bacterial fraction were further analyzed. To screen for the presence of nitrogen-fixing bacteria, the promiscuous tropical legume Vigna unguiculata was used as a trap host. The taxonomy of all purified isolates was genetically verified by 16S rRNA gene Sanger sequencing. (3) Results: Bacterial community results indicated that fire did not drive major changes in bacterial abundance. However, culture-dependent methods allowed the differentiation of bacterial communities between the sampled sites, which were particularly enriched in Proteobacteria with a wide range of plant-beneficial traits, such as plant protection, plant nutrition, and plant growth. Bradyrhizobium was the most frequent symbiotic bacteria trapped in cowpea nodules coexisting with other endophytic bacteria. (4) Conclusion: Although the global analysis did not show significant differences between landscapes or sites with different fire regimes, probably due to the fast recovery of bacterial communities, the isolation of PGPB suggests that the rhizosphere bacteria are driven by the plant species, soil type, and fire regime, and are potentially associated with a wide range of agricultural, environmental, and industrial applications. Thus, the rhizosphere of African savannah ecosystems seems to be an untapped source of bacterial species and strains that should be further exploited for bio-based solutions.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 7

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Fire regime did not drive major changes in rhizosphere bacterial abundance of the savanna trees.

Taxon
Colophospermum mopane and Combretum apiculatumColophospermum mopaneCombretum apiculatume1
Treatment
fire regimese1
Outcome
bacterial abundancee2
Direction
did not drive major changese2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Colophospermum mopane
Colophospermum mopane · TaxonTeo Gómez · Public domain · Wikimedia Commons ↗
Combretum apiculatum
Combretum apiculatum · TaxonJMK · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes”

✓ located verbatim in the source · abstract, characters 10–263 · show in text ↑
e2

“fire did not drive major changes in bacterial abundance”

✓ located verbatim in the source · abstract, characters 847–902 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Culture-dependent methods differentiated rhizosphere bacterial communities between the sampled sites.

Taxon
Colophospermum mopane and Combretum apiculatumColophospermum mopaneCombretum apiculatume1
Organ / stage
rhizospheree1
Outcome
differentiation of bacterial communitiese3
Qualifier
between the sampled sitese3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Colophospermum mopane
Colophospermum mopane · TaxonTeo Gómez · Public domain · Wikimedia Commons ↗
Combretum apiculatum
Combretum apiculatum · TaxonJMK · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes”

✓ located verbatim in the source · abstract, characters 10–263 · show in text ↑
e3

“culture-dependent methods allowed the differentiation of bacterial communities between the sampled sites, which were particularly enriched in Proteobacteria with a wide range of plant-beneficial traits, such as plant protection, plant nutrition, and plant growth”

✓ located verbatim in the source · abstract, characters 913–1175 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The sampled sites were enriched in Proteobacteria with a wide range of plant-beneficial traits.

Taxon
Colophospermum mopane and Combretum apiculatumColophospermum mopaneCombretum apiculatume1
Organ / stage
rhizospheree1
Outcome
enriched in Proteobacteriae3
Qualifier
with a wide range of plant-beneficial traits, such as plant protection, plant nutrition, and plant growthe3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Colophospermum mopane
Colophospermum mopane · TaxonTeo Gómez · Public domain · Wikimedia Commons ↗
Combretum apiculatum
Combretum apiculatum · TaxonJMK · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes”

✓ located verbatim in the source · abstract, characters 10–263 · show in text ↑
e3

“culture-dependent methods allowed the differentiation of bacterial communities between the sampled sites, which were particularly enriched in Proteobacteria with a wide range of plant-beneficial traits, such as plant protection, plant nutrition, and plant growth”

✓ located verbatim in the source · abstract, characters 913–1175 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Bradyrhizobium was the most frequent symbiotic bacterium trapped in cowpea nodules.

Taxon
Vigna unguiculataVigna unguiculatae5
Organ / stage
nodulese4
Interactor
BradyrhizobiumBradyrhizobiume4symbiont
Outcome
most frequent symbiotic bacteriae4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vigna unguiculata
Vigna unguiculata · TaxonHeraldDesa at English Wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗
Bradyrhizobium
Bradyrhizobium · Interactor · picture of the genus (one of its species)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e4

“Bradyrhizobium was the most frequent symbiotic bacteria trapped in cowpea nodules coexisting with other endophytic bacteria”

✓ located verbatim in the source · abstract, characters 1177–1300 · show in text ↑
e5

“the promiscuous tropical legume Vigna unguiculata was used as a trap host”

✓ located verbatim in the source · abstract, characters 617–690 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

The global analysis showed no significant difference in rhizosphere bacteria between landscapes or sites with different fire regimes.

Taxon
Colophospermum mopane and Combretum apiculatumColophospermum mopaneCombretum apiculatume1
Treatment
different fire regimese6
Outcome
significant differencese6
Direction
did not showe6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Colophospermum mopane
Colophospermum mopane · TaxonTeo Gómez · Public domain · Wikimedia Commons ↗
Combretum apiculatum
Combretum apiculatum · TaxonJMK · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes”

✓ located verbatim in the source · abstract, characters 10–263 · show in text ↑
e6

“the global analysis did not show significant differences between landscapes or sites with different fire regimes”

✓ located verbatim in the source · abstract, characters 1327–1439 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Rhizosphere bacteria appear to be associated with plant species, soil type and fire regime.

Taxon
Colophospermum mopane and Combretum apiculatumColophospermum mopaneCombretum apiculatume1
Treatment
plant species, soil type, and fire regimee0
Outcome
rhizosphere bacteriae0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Colophospermum mopane
Colophospermum mopane · TaxonTeo Gómez · Public domain · Wikimedia Commons ↗
Combretum apiculatum
Combretum apiculatum · TaxonJMK · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes”

✓ located verbatim in the source · abstract, characters 10–263 · show in text ↑
e0

“the isolation of PGPB suggests that the rhizosphere bacteria are driven by the plant species, soil type, and fire regime”

✓ located verbatim in the source · abstract, characters 1501–1621 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The rhizosphere of African savanna trees should be further exploited as a source of bacterial species and strains.

Taxon
Colophospermum mopane and Combretum apiculatumColophospermum mopaneCombretum apiculatume1
Outcome
bacterial species and strainse7
Qualifier
should be further exploitede7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Colophospermum mopane
Colophospermum mopane · TaxonTeo Gómez · Public domain · Wikimedia Commons ↗
Combretum apiculatum
Combretum apiculatum · TaxonJMK · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Assessing bacterial diversity and plant-growth-promoting functions in the rhizosphere of the native African trees Colophospermum mopane and Combretum apiculatum in three landscapes of the Limpopo National Park (Mozambique), subjected to two fire regimes”

✓ located verbatim in the source · abstract, characters 10–263 · show in text ↑
e7

“the rhizosphere of African savannah ecosystems seems to be an untapped source of bacterial species and strains that should be further exploited”

✓ located verbatim in the source · abstract, characters 1739–1882 · show in text ↑