Paper · 2021 · PeerJ

Comparative transcriptome analysis of differentially expressed genes related to the physiological changes of yellow-green leaf mutant of maize

Tingchun Li; Huaying Yang; Yan Lu; et al.

12
claims
24
verbatim quotes
15
citations
2
research areas
✓
Open access · cc-by

Abstract

Chlorophylls, green pigments in chloroplasts, are essential for photosynthesis. Reduction in chlorophyll content may result in retarded growth, dwarfism, and sterility. In this study, a yellow-green leaf mutant of maize, indicative of abnormity in chlorophyll content, was identified. The physiological parameters of this mutant were measured. Next, global gene expression of this mutant was determined using transcriptome analysis and compared to that of wild-type maize plants. The yellow-green leaf mutant of maize was found to contain lower contents of chlorophyll a , chlorophyll b and carotenoid compounds. It contained fewer active PSII centers and displayed lower values of original chlorophyll fluorescence parameters than the wild-type plants. The real-time fluorescence yield, the electron transport rate, and the net photosynthetic rate of the mutant plants showed reduction as well. In contrast, the maximum photochemical quantum yield of PSII of the mutant plants was similar to that of the wild-type plants. Comparative transcriptome analysis of the mutant plants and wild-type plants led to the identification of differentially expressed 1,122 genes, of which 536 genes were up-regulated and 586 genes down-regulated in the mutant. Five genes in the chlorophyll metabolism pathway, nine genes in the tricarboxylic acid cycle and seven genes related to the conversion of sucrose to starch displayed down-regulated expression. In contrast, genes encoding a photosystem II reaction center PsbP family protein and the PGR5-like protein 1A (PGRL1A) exhibited increased transcript abundance.

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Claims 12

Observationobservedoriginal resultmeasured

Claim · model-written summary

The maize yellow-green leaf mutant contained lower contents of chlorophyll a, chlorophyll b and carotenoid compounds.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
contents of chlorophyll a , chlorophyll b and carotenoid compoundse0
Direction
lowere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“The yellow-green leaf mutant of maize was found to contain lower contents of chlorophyll a , chlorophyll b and carotenoid compounds”

✓ located verbatim in the source · abstract, characters 480–611 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The mutant contained fewer active PSII centers than wild-type plants.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
active PSII centerse0
Direction
fewere0
Comparator
wild-type plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“It contained fewer active PSII centers and displayed lower values of original chlorophyll fluorescence parameters than the wild-type plants”

✓ located verbatim in the source · abstract, characters 613–752 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The mutant displayed lower values of original chlorophyll fluorescence parameters than wild-type plants.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
original chlorophyll fluorescence parameterse0
Direction
lowere0
Comparator
wild-type plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“It contained fewer active PSII centers and displayed lower values of original chlorophyll fluorescence parameters than the wild-type plants”

✓ located verbatim in the source · abstract, characters 613–752 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Real-time fluorescence yield, electron transport rate and net photosynthetic rate were reduced in the mutant plants.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
real-time fluorescence yield, the electron transport rate, and the net photosynthetic ratee0
Direction
reductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“The real-time fluorescence yield, the electron transport rate, and the net photosynthetic rate of the mutant plants showed reduction as well”

✓ located verbatim in the source · abstract, characters 754–894 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

The maximum photochemical quantum yield of PSII of the mutant was similar to that of wild-type plants.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
maximum photochemical quantum yield of PSIIe0
Direction
similare0
Comparator
wild-type plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“the maximum photochemical quantum yield of PSII of the mutant plants was similar to that of the wild-type plants”

✓ located verbatim in the source · abstract, characters 909–1021 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Comparative transcriptome analysis of the mutant and wild-type maize identified 1,122 differentially expressed genes.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
differentially expressed 1,122 genese0
Value
1,122e0
Comparator
wild-type plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“Comparative transcriptome analysis of the mutant plants and wild-type plants led to the identification of differentially expressed 1,122 genes, of which 536 genes were up-regulated and 586 genes down-regulated in the mutant”

✓ located verbatim in the source · abstract, characters 1023–1246 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the differentially expressed genes, 536 were up-regulated in the mutant.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
genes were up-regulatede0
Direction
up-regulatede0
Value
536 genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“Comparative transcriptome analysis of the mutant plants and wild-type plants led to the identification of differentially expressed 1,122 genes, of which 536 genes were up-regulated and 586 genes down-regulated in the mutant”

✓ located verbatim in the source · abstract, characters 1023–1246 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the differentially expressed genes, 586 were down-regulated in the mutant.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
genes down-regulatede0
Direction
down-regulatede0
Value
586 genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“Comparative transcriptome analysis of the mutant plants and wild-type plants led to the identification of differentially expressed 1,122 genes, of which 536 genes were up-regulated and 586 genes down-regulated in the mutant”

✓ located verbatim in the source · abstract, characters 1023–1246 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Five genes in the chlorophyll metabolism pathway displayed down-regulated expression in the mutant.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
genes in the chlorophyll metabolism pathwaye0
Direction
down-regulatede0
Value
Five genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“Five genes in the chlorophyll metabolism pathway, nine genes in the tricarboxylic acid cycle and seven genes related to the conversion of sucrose to starch displayed down-regulated expression”

✓ located verbatim in the source · abstract, characters 1248–1439 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nine genes in the tricarboxylic acid cycle displayed down-regulated expression in the mutant.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
genes in the tricarboxylic acid cyclee0
Direction
down-regulatede0
Value
nine genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“Five genes in the chlorophyll metabolism pathway, nine genes in the tricarboxylic acid cycle and seven genes related to the conversion of sucrose to starch displayed down-regulated expression”

✓ located verbatim in the source · abstract, characters 1248–1439 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Seven genes related to the conversion of sucrose to starch displayed down-regulated expression in the mutant.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Outcome
genes related to the conversion of sucrose to starche0
Direction
down-regulatede0
Value
seven genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“Five genes in the chlorophyll metabolism pathway, nine genes in the tricarboxylic acid cycle and seven genes related to the conversion of sucrose to starch displayed down-regulated expression”

✓ located verbatim in the source · abstract, characters 1248–1439 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genes encoding a photosystem II reaction center PsbP family protein and PGR5-like protein 1A (PGRL1A) showed increased transcript abundance in the mutant.

Taxon
maizeZea mayst0
Material
yellow-green leaf mutantt0
Gene
photosystem II reaction center PsbP family protein and the PGR5-like protein 1A (PGRL1A)e0
Outcome
transcript abundancee0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“yellow-green leaf mutant of maize”

✓ located verbatim in the source · title, characters 109–142 · show in text ↑
e0

“genes encoding a photosystem II reaction center PsbP family protein and the PGR5-like protein 1A (PGRL1A) exhibited increased transcript abundance”

✓ located verbatim in the source · abstract, characters 1454–1600 · show in text ↑