Paper · 2021 · Soil Science Society of America Journal

Compost applications increase bacterial community diversity in the apple rhizosphere

Hazem Sharaf; Ashley A. Thompson; Mark A. Williams; et al.

11
claims
22
verbatim quotes
25
citations
2
research areas
✓
Open access

Abstract

Abstract Sustainable practices are key to the improvement of soil fertility and quality in apple ( Malus × domestica Borkh.) orchards. Rootstock genotype and fertilizer inputs can alter soil biology, as well as aboveground traits including nutrient acquisition. In this study, a factorial design was used to assess the interaction between two apple rootstocks, ‘Geneva 41’ (‘G.41’) and ‘Malling 9’ (‘M.9’) with four fertilizer treatments [chicken‐litter compost, yardwaste compost, fertigation using Ca(NO 3 ) 2 , and an unamended control]. The bacterial community in the rhizosphere was assessed for its impact on both plant and soil properties for each rootstock × fertilizer treatment combination. The bacterial community was dominated by Acidobacteria, Proteobacteria, and Planctomycetes, but Verrucomicrobia and Chloroflexi were the most responsive to the fertilizer treatments. The chicken litter and yardwaste treatments had a greater effect on bacterial community structure than the control. Yardwaste, in particular, was associated with increased relative abundance of Chloroflexi, which was correlated with soil nutrient concentrations. Malling 9 had a greater bacterial diversity than G.41, but the rootstock treatment had no independent effect on the rhizosphere community structure. There was, however, a strong interaction between the rootstock and fertilizer treatments. Carbon cycling was the most prominent functional change associated with the soil bacterial community. These results suggest that compost amendments have a more positive effect on soil bacterial activity and nutrient availability than Ca(NO 3 ) 2 . Our work shows that waste‐stream amendments can lead to multiple positive responses, such as increasing aboveground tree biomass, thus potentially improving orchard productivity.

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Claims 11

Associationobservedoriginal resultmeasured

Claim · model-written summary

Yardwaste compost was associated with increased relative abundance of Chloroflexi in the apple rhizosphere.

Treatment
Yardwastee0
Outcome
relative abundance of Chloroflexie0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Yardwaste, in particular, was associated with increased relative abundance of Chloroflexi, which was correlated with soil nutrient concentrations”

✓ located verbatim in the source · abstract, characters 1000–1145 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Chicken litter and yardwaste compost had a greater effect on rhizosphere bacterial community structure than the control in apple.

Treatment
chicken litter and yardwaste treatmentse0
Outcome
bacterial community structuree0
Direction
greatere0
Comparator
controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“The chicken litter and yardwaste treatments had a greater effect on bacterial community structure than the control”

✓ located verbatim in the source · abstract, characters 884–998 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Malling 9 apple rootstock had greater bacterial diversity in the rhizosphere than G.41.

Material
Malling 9e0
Outcome
bacterial diversitye0
Direction
greatere0
Comparator
G.41e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Malling 9 had a greater bacterial diversity than G.41”

✓ located verbatim in the source · abstract, characters 1147–1200 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

The rootstock treatment had no independent effect on the rhizosphere bacterial community structure in apple.

Treatment
rootstock treatmente0
Outcome
rhizosphere community structuree0
Direction
no independent effecte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“the rootstock treatment had no independent effect on the rhizosphere community structure”

✓ located verbatim in the source · abstract, characters 1206–1294 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

A strong interaction between rootstock and fertilizer treatments was found for the apple rhizosphere bacterial community.

Treatment
rootstock and fertilizer treatmentse0
Outcome
interactione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“There was, however, a strong interaction between the rootstock and fertilizer treatments”

✓ located verbatim in the source · abstract, characters 1296–1384 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Carbon cycling was the most prominent functional change associated with the apple rhizosphere bacterial community.

Outcome
Carbon cyclinge0
Qualifier
most prominent functional changee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Carbon cycling was the most prominent functional change associated with the soil bacterial community”

✓ located verbatim in the source · abstract, characters 1386–1486 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Compost amendments had a more positive effect than Ca(NO3)2 on soil bacterial activity and nutrient availability.

Treatment
compost amendmentse0
Outcome
soil bacterial activity and nutrient availabilitye0
Direction
more positivee0
Comparator
Ca(NO 3 ) 2e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“These results suggest that compost amendments have a more positive effect on soil bacterial activity and nutrient availability than Ca(NO 3 ) 2”

✓ located verbatim in the source · abstract, characters 1488–1631 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Observationauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Waste-stream compost amendments may increase aboveground tree biomass in apple orchards and so improve productivity.

Outcome
aboveground tree biomasse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“such as increasing aboveground tree biomass, thus potentially improving orchard productivity”

✓ located verbatim in the source · abstract, characters 1719–1811 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Relative abundance of Chloroflexi in the apple rhizosphere was correlated with soil nutrient concentrations after yardwaste compost.

Treatment
Yardwastee0
Outcome
soil nutrient concentrationse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Yardwaste, in particular, was associated with increased relative abundance of Chloroflexi, which was correlated with soil nutrient concentrations”

✓ located verbatim in the source · abstract, characters 1000–1145 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The apple rhizosphere bacterial community was dominated by Acidobacteria, Proteobacteria and Planctomycetes.

Outcome
bacterial communitye0
Qualifier
dominated by Acidobacteria, Proteobacteria, and Planctomycetese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“The bacterial community was dominated by Acidobacteria, Proteobacteria, and Planctomycetes”

✓ located verbatim in the source · abstract, characters 701–791 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Verrucomicrobia and Chloroflexi were the most responsive bacterial groups to the fertilizer treatments in apple rhizosphere.

Treatment
fertilizer treatmentse0
Outcome
Verrucomicrobia and Chloroflexie0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Verrucomicrobia and Chloroflexi were the most responsive to the fertilizer treatments”

✓ located verbatim in the source · abstract, characters 797–882 · show in text ↑
t0

“Compost applications increase bacterial community diversity in the apple rhizosphere”

✓ located verbatim in the source · title, characters 0–84 · show in text ↑

fertilization · soil: biology · Malus domestica (apple)Positive and negative results

11 papers: 10 positive, 1 negative or no effect

9 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
  3. positive

7 papers more in this group

See all 11 papers →

other · soil: biology · Malus domestica (apple)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.