Paper · 2021 · Plants

Genome-Wide Identification, Genomic Organization, and Characterization of Potassium Transport-Related Genes in Cajanus cajan and Their Role in Abiotic Stress

Muhammad Hussnain Siddique; Naeem Iqbal Babar; Roshan Zameer; et al.

16
claims
32
verbatim quotes
19
citations
2
research areas
✓
Open access · cc-by

Abstract

Potassium is the most important and abundant inorganic cation in plants and it can comprise up to 10% of a plant’s dry weight. Plants possess complex systems of transporters and channels for the transport of K+ from soil to numerous parts of plants. Cajanus cajan is cultivated in different regions of the world as an economical source of carbohydrates, fiber, proteins, and fodder for animals. In the current study, 39 K+ transport genes were identified in C. cajan, including 25 K+ transporters (17 carrier-like K+ transporters (KUP/HAK/KTs), 2 high-affinity potassium transporters (HKTs), and 6 K+ efflux transporters (KEAs) and 14 K+ channels (9 shakers and 5 tandem-pore K+ channels (TPKs). Chromosomal mapping indicated that these genes were randomly distributed among 10 chromosomes. A comparative phylogenetic analysis including protein sequences from Glycine max, Arabidopsis thaliana, Oryza sativa, Medicago truncatula Cicer arietinum, and C. cajan suggested vital conservation of K+ transport genes. Gene structure analysis showed that the intron/exon organization of K+ transporter and channel genes is highly conserved in a family-specific manner. In the promoter region, many cis-regulatory elements were identified related to abiotic stress, suggesting their role in abiotic stress response. Abiotic stresses (salt, heat, and drought) adversely affect chlorophyll, carotenoids contents, and total soluble proteins. Furthermore, the activities of catalase, superoxide, and peroxidase were altered in C. cajan leaves under applied stresses. Expression analysis (RNA-seq data and quantitative real-time PCR) revealed that several K+ transport genes were expressed in abiotic stress-responsive manners. The present study provides an in-depth understanding of K+ transport system genes in C. cajan and serves as a basis for further characterization of these genes.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 16

Observationobservedoriginal resultmeasured

Claim · model-written summary

Thirty-nine potassium transport genes were identified in Cajanus cajan.

Taxon
Cajanus cajanCajanus cajant0
Outcome
K+ transport genese0
Value
39e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“39 K+ transport genes were identified in C. cajan, including 25 K+ transporters (17 carrier-like K+ transporters (KUP/HAK/KTs), 2 high-affinity potassium transporters (HKTs), and 6 K+ efflux transporters (KEAs) and 14 K+ channels (9 shakers and 5 tandem-pore K+ channels (TPKs)”

✓ located verbatim in the source · abstract, characters 417–694 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty-five potassium transporters were identified in Cajanus cajan.

Taxon
Cajanus cajanCajanus cajant0
Outcome
K+ transporterse0
Value
25e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“25 K+ transporters (17 carrier-like K+ transporters (KUP/HAK/KTs), 2 high-affinity potassium transporters (HKTs), and 6 K+ efflux transporters (KEAs)”

✓ located verbatim in the source · abstract, characters 478–627 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Seventeen carrier-like potassium transporters were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
carrier-like K+ transporterse0
Value
17e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“17 carrier-like K+ transporters (KUP/HAK/KTs)”

✓ located verbatim in the source · abstract, characters 498–543 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two high-affinity potassium transporters were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
high-affinity potassium transporterse0
Value
2e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“2 high-affinity potassium transporters (HKTs)”

✓ located verbatim in the source · abstract, characters 545–590 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Six potassium efflux transporters were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
K+ efflux transporterse0
Value
6e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“6 K+ efflux transporters (KEAs)”

✓ located verbatim in the source · abstract, characters 596–627 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fourteen potassium channels were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
K+ channelse0
Value
14e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“14 K+ channels (9 shakers and 5 tandem-pore K+ channels (TPKs)”

✓ located verbatim in the source · abstract, characters 632–694 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nine shaker potassium channels were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
shakerse0
Value
9e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“9 shakers”

✓ located verbatim in the source · abstract, characters 648–657 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Five tandem-pore potassium channels were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
tandem-pore K+ channelse0
Value
5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“5 tandem-pore K+ channels (TPKs)”

✓ located verbatim in the source · abstract, characters 662–694 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The potassium transport genes were randomly distributed among ten chromosomes.

Taxon
Cajanus cajanCajanus cajant0
Outcome
randomly distributed among 10 chromosomese0
Value
10 chromosomese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“these genes were randomly distributed among 10 chromosomes”

✓ located verbatim in the source · abstract, characters 731–789 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Comparative phylogenetic analysis suggested conservation of potassium transport genes.

Taxon
Cajanus cajanCajanus cajant0
Outcome
conservation of K+ transport genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“suggested vital conservation of K+ transport genes”

✓ located verbatim in the source · abstract, characters 959–1009 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Potassium transporter and channel genes had highly conserved family-specific intron/exon organization.

Taxon
Cajanus cajanCajanus cajant0
Outcome
intron/exon organization of K+ transporter and channel genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“the intron/exon organization of K+ transporter and channel genes is highly conserved in a family-specific manner”

✓ located verbatim in the source · abstract, characters 1047–1159 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Many promoter cis-regulatory elements related to abiotic stress were identified.

Taxon
Cajanus cajanCajanus cajant0
Outcome
cis-regulatory elementse0
Qualifier
related to abiotic stresse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“many cis-regulatory elements were identified related to abiotic stress”

✓ located verbatim in the source · abstract, characters 1185–1255 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Salt, heat and drought adversely affected chlorophyll and carotenoid contents.

Taxon
Cajanus cajanCajanus cajant0
Treatment
Abiotic stresses (salt, heat, and drought)e0
Outcome
chlorophyll, carotenoids contentse0
Direction
adversely affecte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“Abiotic stresses (salt, heat, and drought) adversely affect chlorophyll, carotenoids contents, and total soluble proteins.”

✓ located verbatim in the source · abstract, characters 1307–1429 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Salt, heat and drought adversely affected total soluble proteins.

Taxon
Cajanus cajanCajanus cajant0
Treatment
Abiotic stresses (salt, heat, and drought)e0
Outcome
total soluble proteinse0
Direction
adversely affecte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“Abiotic stresses (salt, heat, and drought) adversely affect chlorophyll, carotenoids contents, and total soluble proteins.”

✓ located verbatim in the source · abstract, characters 1307–1429 · show in text ↑
Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

Abiotic stresses altered catalase, superoxide and peroxidase activities in leaves.

Taxon
Cajanus cajanCajanus cajant0
Organ / stage
leavese0
Treatment
applied stressese0
Outcome
activities of catalase, superoxide, and peroxidasee0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“the activities of catalase, superoxide, and peroxidase were altered in C. cajan leaves under applied stresses.”

✓ located verbatim in the source · abstract, characters 1443–1553 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Several potassium transport genes showed abiotic stress-responsive expression.

Taxon
Cajanus cajanCajanus cajant0
Gene
K+ transport genese0
Outcome
expressed in abiotic stress-responsive mannerse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cajanus cajan
Cajanus cajan · TaxonFilo gèn' · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Cajanus cajan”

✓ located verbatim in the source · title, characters 111–124 · show in text ↑
e0

“several K+ transport genes were expressed in abiotic stress-responsive manners”

✓ located verbatim in the source · abstract, characters 1634–1712 · show in text ↑

salinity · physiology: osmolytes · Cajanus cajan (pigeon pea)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
See all 3 papers →

drought · physiology: osmolytes · Cajanus cajan (pigeon pea)Positive and negative results

4 papers: 3 positive, 1 negative or no effect

3 in the opposite direction

  1. positive
  2. positive
  3. positive
See all 4 papers →

drought · physiology: pigments · Cajanus cajan (pigeon pea)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

salinity · physiology: pigments · Cajanus cajan (pigeon pea)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.