Paper · 2022 · Journal of Basic and Applied Genetics

CAUSES AND CONSEQUENCES OF DNA CONTENT VARIATION IN ZEA

G.E. González; M.F. Realini; M.F. Fourastié; et al.

11
claims
20
verbatim quotes
4
citations
3
research areas
✓
Open access · cc-by-nc-sa

Abstract

Cytogenetic evidence indicates that Zea, which comprises maize (Z. mays ssp. mays) and its wild relatives, is an allopolyploid genus. Our research group has carried out numerous cytogenetic studies on Zea species, mainly focused on native Argentinian and Bolivian maize landraces. We found a wide inter- and intraspecific genome size variation in the genus, with mean 2C-values ranging between 4.20 and 11.36 pg. For the maize landraces studied here, it varied between 4.20 and 6.75 pg. The objectives of this work are to analyze the causes of genome size variation and to discuss their adaptive value in Zea. This variation is mainly attributed to differences in the heterochromatin located in the knobs and to the amount of interspersed DNA from retrotransposons. Polymorphisms in presence or absence of B-chromosomes (Bs) and the population frequency of Bs are also a source of genome size variation, with doses ranging between one and eight in the landraces analyzed here. Correlation analysis revealed that the percentage of heterochromatin is positively correlated with genome size. In addition, populations cultivated at higher altitudes, which are known to be precocious, have smaller genome sizes than do those growing at lower altitudes. This information, together with the positive correlation observed between the length of the vegetative cycle and the percentage of heterochromatin, led us to propose that it has an adaptive role. On the other hand, the negative relationship found between Bs and heterochromatic knobs allowed us to propose the existence of an intragenomic conflict between these elements. We hypothesize that an optimal nucleotype may have resulted from such intranuclear conflict, where genome adjustments led to a suitable length of the vegetative cycle for maize landraces growing across altitudinal clines. Key words: B chromosomes, heterochromatin, intragenomic conflict, knobs, maize landraces

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Claims 11

Observationobservedoriginal resultmeasured

Claim · model-written summary

Zea species varied in genome size, with mean 2C-values of 4.20 to 11.36 pg.

Taxon
ZEAZeat0
Outcome
genome size variatione0
Value
4.20 and 11.36 pge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea
Zea · Taxon · picture of the genus (one of its species)Paranoid · Public domain · Wikimedia Commons ↗

Verbatim

e0

“We found a wide inter- and intraspecific genome size variation in the genus, with mean 2C-values ranging between 4.20 and 11.36 pg.”

✓ located verbatim in the source · abstract, characters 281–412 · show in text ↑
t0

“ZEA”

✓ located verbatim in the source · title, characters 52–55 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genome size in the maize landraces varied from 4.20 to 6.75 pg.

Taxon
maizeZea mayse0
Material
maize landracese0
Outcome
it variede0
Value
4.20 and 6.75 pge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“For the maize landraces studied here, it varied between 4.20 and 6.75 pg.”

✓ located verbatim in the source · abstract, characters 413–486 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Differences in knob heterochromatin and retrotransposon DNA were attributed as the main sources of genome size variation in Zea.

Taxon
ZEAZeat0
Outcome
This variatione0
Qualifier
differences in the heterochromatin located in the knobs and to the amount of interspersed DNA from retrotransposonse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea
Zea · Taxon · picture of the genus (one of its species)Paranoid · Public domain · Wikimedia Commons ↗

Verbatim

e0

“This variation is mainly attributed to differences in the heterochromatin located in the knobs and to the amount of interspersed DNA from retrotransposons.”

✓ located verbatim in the source · abstract, characters 610–765 · show in text ↑
t0

“ZEA”

✓ located verbatim in the source · title, characters 52–55 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

B-chromosome presence and frequency contributed to genome size variation in maize landraces, with doses from one to eight.

Taxon
maizeZea mayse1
Material
landracese0
Outcome
genome size variatione0
Value
one and eighte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Polymorphisms in presence or absence of B-chromosomes (Bs) and the population frequency of Bs are also a source of genome size variation, with doses ranging between one and eight in the landraces analyzed here.”

✓ located verbatim in the source · abstract, characters 766–976 · show in text ↑
e1

“native Argentinian and Bolivian maize landraces”

✓ located verbatim in the source · abstract, characters 232–279 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Heterochromatin percentage was positively correlated with genome size in Zea.

Taxon
ZEAZeat0
Outcome
genome sizee0
Direction
positively correlatede0
Comparator
percentage of heterochromatine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea
Zea · Taxon · picture of the genus (one of its species)Paranoid · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Correlation analysis revealed that the percentage of heterochromatin is positively correlated with genome size.”

✓ located verbatim in the source · abstract, characters 977–1088 · show in text ↑
t0

“ZEA”

✓ located verbatim in the source · title, characters 52–55 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Maize populations at higher altitudes had smaller genomes than those at lower altitudes.

Taxon
maizeZea mayse1
Outcome
genome sizese0
Direction
smallere0
Comparator
those growing at lower altitudese0
Setting
higher altitudese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“populations cultivated at higher altitudes, which are known to be precocious, have smaller genome sizes than do those growing at lower altitudes.”

✓ located verbatim in the source · abstract, characters 1102–1247 · show in text ↑
e1

“native Argentinian and Bolivian maize landraces”

✓ located verbatim in the source · abstract, characters 232–279 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Vegetative cycle length was positively correlated with heterochromatin percentage in maize landraces.

Taxon
maizeZea mayse1
Outcome
length of the vegetative cyclee0
Direction
positive correlatione0
Comparator
percentage of heterochromatine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the positive correlation observed between the length of the vegetative cycle and the percentage of heterochromatin”

✓ located verbatim in the source · abstract, characters 1280–1394 · show in text ↑
e1

“native Argentinian and Bolivian maize landraces”

✓ located verbatim in the source · abstract, characters 232–279 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

B chromosomes and heterochromatic knobs had a negative relationship in maize landraces.

Taxon
maizeZea mayse1
Outcome
Bse0
Direction
negative relationshipe0
Comparator
heterochromatic knobse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the negative relationship found between Bs and heterochromatic knobs”

✓ located verbatim in the source · abstract, characters 1463–1531 · show in text ↑
e1

“native Argentinian and Bolivian maize landraces”

✓ located verbatim in the source · abstract, characters 232–279 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors proposed that heterochromatin has an adaptive role in maize landraces.

Taxon
maizeZea mayse1
Outcome
adaptive rolee0
Qualifier
percentage of heterochromatine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the percentage of heterochromatin, led us to propose that it has an adaptive role.”

✓ located verbatim in the source · abstract, characters 1361–1443 · show in text ↑
e1

“native Argentinian and Bolivian maize landraces”

✓ located verbatim in the source · abstract, characters 232–279 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors proposed intragenomic conflict between B chromosomes and heterochromatic knobs in maize landraces.

Taxon
maizeZea mayse1
Outcome
intragenomic conflicte0
Qualifier
Bs and heterochromatic knobse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the negative relationship found between Bs and heterochromatic knobs allowed us to propose the existence of an intragenomic conflict between these elements.”

✓ located verbatim in the source · abstract, characters 1463–1619 · show in text ↑
e1

“native Argentinian and Bolivian maize landraces”

✓ located verbatim in the source · abstract, characters 232–279 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

The authors hypothesized that intranuclear conflict produced an optimal nucleotype that adjusted the vegetative cycle of maize landraces across altitude.

Taxon
maizeZea mayse0
Outcome
suitable length of the vegetative cyclee0
Qualifier
intranuclear conflicte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“We hypothesize that an optimal nucleotype may have resulted from such intranuclear conflict, where genome adjustments led to a suitable length of the vegetative cycle for maize landraces growing across altitudinal clines.”

✓ located verbatim in the source · abstract, characters 1620–1841 · show in text ↑