Paper · 2023 · Science Advances

C 4 gene induction during de-etiolation evolved through changes in cis to allow integration with ancestral C 3 gene regulatory networks

Pallavi Singh; Sean R. Stevenson; Patrick J. Dickinson; et al.

6
claims
7
verbatim quotes
21
citations
2
research areas
✓
Open access · cc-by

Abstract

C 4 photosynthesis has evolved by repurposing enzymes found in C 3 plants. Compared with the ancestral C 3 state, accumulation of C 4 cycle proteins is enhanced. We used de-etiolation of C 4 Gynandropsis gynandra and C 3 Arabidopsis thaliana to understand this process. C 4 gene expression and chloroplast biogenesis in G. gynandra were tightly coordinated. Although C 3 and C 4 photosynthesis genes showed similar induction patterns, in G. gynandra , C 4 genes were more strongly induced than orthologs from A. thaliana . In vivo binding of TGA and homeodomain as well as light-responsive elements such as G- and I-box motifs were associated with the rapid increase in transcripts of C 4 genes. Deletion analysis confirmed that regions containing G- and I-boxes were necessary for high expression. The data support a model in which accumulation of transcripts derived from C 4 photosynthesis genes in C 4 leaves is enhanced because modifications in cis allowed integration into ancestral transcriptional networks.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Associationobservedoriginal resultmeasured

Claim · model-written summary

C4 gene expression and chloroplast biogenesis were tightly coordinated in G. gynandra.

Taxon
G. gynandraGynandropsis gynandrae0
Outcome
C 4 gene expression and chloroplast biogenesise0

Not reportedOrgan / stageDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gynandropsis gynandra
Gynandropsis gynandra · TaxonSosicles Ennius · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“C 4 gene expression and chloroplast biogenesis in G. gynandra were tightly coordinated”

✓ located verbatim in the source · abstract, characters 270–356 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

C3 and C4 photosynthesis genes showed similar induction patterns.

Taxon
Gynandropsis gynandraGynandropsis gynandrat0
Outcome
similar induction patternse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gynandropsis gynandra
Gynandropsis gynandra · TaxonSosicles Ennius · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“C 3 and C 4 photosynthesis genes showed similar induction patterns”

✓ located verbatim in the source · abstract, characters 367–433 · show in text ↑
t0

“C 4 Gynandropsis gynandra and C 3 Arabidopsis thaliana”

✓ located verbatim in the source · abstract, characters 187–241 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

C4 genes in G. gynandra were more strongly induced than Arabidopsis orthologs.

Taxon
G. gynandraGynandropsis gynandrae0
Gene
C 4 genese0
Outcome
inducede0
Direction
more stronglye0
Comparator
orthologs from A. thalianae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gynandropsis gynandra
Gynandropsis gynandra · TaxonSosicles Ennius · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“in G. gynandra , C 4 genes were more strongly induced than orthologs from A. thaliana”

✓ located verbatim in the source · abstract, characters 435–520 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

TGA and homeodomain binding and light responsive motifs were associated with rapid C4 transcript increases.

Gene
C 4 genese0
Outcome
transcripts of C 4 genese0
Direction
rapid increasee0
Qualifier
In vivo binding of TGA and homeodomain as well as light-responsive elements such as G- and I-box motifse0

Not reportedTaxon

Verbatim

e0

“In vivo binding of TGA and homeodomain as well as light-responsive elements such as G- and I-box motifs were associated with the rapid increase in transcripts of C 4 genes”

✓ located verbatim in the source · abstract, characters 523–694 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Regions containing G and I boxes were necessary for high C4 gene expression.

Treatment
Deletione0
Outcome
high expressione0
Qualifier
regions containing G- and I-boxese0

Not reportedTaxonComparatorDirection

Verbatim

e0

“Deletion analysis confirmed that regions containing G- and I-boxes were necessary for high expression”

✓ located verbatim in the source · abstract, characters 696–797 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Cis changes allowed C4 genes to integrate into ancestral transcriptional networks, enhancing transcript accumulation.

Gene
C 4 photosynthesis genese0
Outcome
accumulation of transcriptse0
Direction
enhancede0
Qualifier
modifications in cis allowed integration into ancestral transcriptional networkse0

Not reportedTaxon

Verbatim

e0

“accumulation of transcripts derived from C 4 photosynthesis genes in C 4 leaves is enhanced because modifications in cis allowed integration into ancestral transcriptional networks”

✓ located verbatim in the source · abstract, characters 833–1013 · show in text ↑