Paper · 2023 · AGRIVITA Journal of Agricultural Science

Genetic Diversity Assessment of Citrus Accessions Grown in Indonesia Using Molecular Markers

Chaireni Martasari; Farida Yulianti; Sri Widyaningsih; et al.

8
claims
10
verbatim quotes
3
citations
2
research areas
✓
Open access · cc-by-nc

Abstract

The assessment of genetic diversity is crucial in citrus improvement programs that represents the relationship among genotypes, thus determining an effective plant breeding program. A molecular assessment of 52 collected citrus accessions based on ISSR and SSR was conducted at the ICSFRI in 2020. Based on 4 ISSR primers and 3 SSR primers, the citrus genotypes were grouped into 6 major clusters. Cluster I has the largest 25 members, while Cluster II, III, IV, V and VI have 5, 2, 2, 4 and 13 accession members, respectively. Members of Cluster I are the majority in the mandarin type with spheroids fruit shape with truncate on the fruit top. Cluster II contains citrus accessions from naturally occurring hybrids, while orange accession members of Cluster III are originally grown in different climates. Cluster IV and V members are connected to a common ancestor, Citrus aurantifolia and Citrus limonia . At the same time, Cluster VI is a pumelo group that contains members of Citrus maxima . Clustering based on molecular markers (ISSR and SSR) resulting in this study is useful in citrus breeding programs in Indonesia and other countries. The genetic distance of the parents affects the heterosis effect of the progeny.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

The citrus accessions formed six major ISSR and SSR clusters.

Taxon
citrusCitruse0
Outcome
grouped into 6 major clusterse0
Value
6 major clusterse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Based on 4 ISSR primers and 3 SSR primers, the citrus genotypes were grouped into 6 major clusters.”

✓ located verbatim in the source · abstract, characters 298–397 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Cluster I had 25 members, predominantly mandarin types with spheroid fruit and a truncate top.

Taxon
citrusCitrust0
Material
mandarin typee0
Outcome
Cluster I has the largest 25 memberse0
Value
25 memberse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cluster I has the largest 25 members, while Cluster II, III, IV, V and VI have 5, 2, 2, 4 and 13 accession members, respectively. Members of Cluster I are the majority in the mandarin type with spheroids fruit shape with truncate on the fruit top.”

✓ located verbatim in the source · abstract, characters 398–645 · show in text ↑
t0

“Citrus Accessions”

✓ located verbatim in the source · title, characters 32–49 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Cluster II had five accessions from naturally occurring citrus hybrids.

Taxon
citrusCitruse0
Outcome
Cluster II contains citrus accessions from naturally occurring hybridse0
Value
5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cluster II, III, IV, V and VI have 5, 2, 2, 4 and 13 accession members, respectively. Members of Cluster I are the majority in the mandarin type with spheroids fruit shape with truncate on the fruit top. Cluster II contains citrus accessions from naturally occurring hybrids”

✓ located verbatim in the source · abstract, characters 442–716 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Cluster III had two orange accessions grown in different climates.

Taxon
citrusCitruse0
Material
orangee0
Outcome
orange accession members of Cluster III are originally grown in different climatese0
Value
2e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cluster II, III, IV, V and VI have 5, 2, 2, 4 and 13 accession members, respectively. Members of Cluster I are the majority in the mandarin type with spheroids fruit shape with truncate on the fruit top. Cluster II contains citrus accessions from naturally occurring hybrids, while orange accession members of Cluster III are originally grown in different climates.”

✓ located verbatim in the source · abstract, characters 442–807 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Clusters IV and V had two and four accessions and shared ancestry with Citrus aurantifolia and Citrus limonia.

Taxon
citrusCitruse0
Outcome
connected to a common ancestore0
Qualifier
Citrus aurantifolia and Citrus limoniae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cluster II, III, IV, V and VI have 5, 2, 2, 4 and 13 accession members, respectively. Members of Cluster I are the majority in the mandarin type with spheroids fruit shape with truncate on the fruit top. Cluster II contains citrus accessions from naturally occurring hybrids, while orange accession members of Cluster III are originally grown in different climates. Cluster IV and V members are connected to a common ancestor, Citrus aurantifolia and Citrus limonia”

✓ located verbatim in the source · abstract, characters 442–907 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Cluster VI was a pumelo group containing Citrus maxima.

Taxon
citrusCitruse0
Material
Citrus maximae0
Outcome
pumelo group that contains members of Citrus maximae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cluster VI is a pumelo group that contains members of Citrus maxima”

✓ located verbatim in the source · abstract, characters 928–995 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The ISSR and SSR clustering was considered useful for citrus breeding.

Taxon
citrusCitruse0
Outcome
useful in citrus breeding programse0
Setting
Indonesiae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Clustering based on molecular markers (ISSR and SSR) resulting in this study is useful in citrus breeding programs in Indonesia and other countries.”

✓ located verbatim in the source · abstract, characters 998–1146 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors state that parental genetic distance affects progeny heterosis.

Taxon
CitrusCitrust0
Material
parentse0
Outcome
heterosis effect of the progenye0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The genetic distance of the parents affects the heterosis effect of the progeny.”

✓ located verbatim in the source · abstract, characters 1147–1227 · show in text ↑
t0

“Citrus Accessions”

✓ located verbatim in the source · title, characters 32–49 · show in text ↑