Paper · 2023 · CTU Journal of Innovation and Sustainable Development

Characterization of single nucleotide polymorphisms in chloroplast genomes of Musaceae Juss.

Bao Ngoc Mach; Hoang Dang Khoa Do

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verbatim quotes
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citations
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Open access · cc-by-nc

Abstract

Musaceae Juss., also called the bananas and plantains family contains essential food crops with critical economic value and nutritional and medicinal properties. In this study, complete chloroplast genomes of 55 species of Musaceae, including all three genera of Musa, Musella, and Ensete, were used to characterize single nucleotide polymorphisms. Also, nucleotide diversity among surveyed species was observed. The results showed regions of high genetic variability in the chloroplast genome and genes carrying multiple single-nucleotide polymorphisms specific for species and genera, such as ycf1, ycf2, ndhF, matK, accD, infA, and petL. A biased nucleotide conversion toward G, C, and T suggests a trend in the evolution of the Musaceae chloroplast genomes. Phylogenetic analysis revealed a close relationship between Ensete and Musella genera and confirmed the existence of two clades in the genus Musa. This study summarizes nucleotide diversity, focusing on single-nucleotide polymorphisms, which are helpful for further studies on population genetics and developing molecular markers in Musaceae.

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Claims 5

Observationobservedoriginal resultmeasured

Claim · model-written summary

Musaceae chloroplast genomes contained highly variable regions.

Taxon
MusaceaeMusaceaet0
Outcome
regions of high genetic variabilitye0

Verbatim

e0

“The results showed regions of high genetic variability in the chloroplast genome”

✓ located verbatim in the source · abstract, characters 413–493 · show in text ↑
t0

“Musaceae Juss.”

✓ located verbatim in the source · title, characters 78–92 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Several chloroplast genes carried multiple SNPs specific to Musaceae species and genera.

Taxon
MusaceaeMusaceaet0
Gene
ycf1, ycf2, ndhF, matK, accD, infA, and petLe0
Outcome
multiple single-nucleotide polymorphisms specific for species and generae0

Verbatim

e0

“genes carrying multiple single-nucleotide polymorphisms specific for species and genera, such as ycf1, ycf2, ndhF, matK, accD, infA, and petL”

✓ located verbatim in the source · abstract, characters 498–639 · show in text ↑
t0

“Musaceae Juss.”

✓ located verbatim in the source · title, characters 78–92 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Musaceae chloroplast genomes showed biased nucleotide conversion toward G, C, and T.

Taxon
MusaceaeMusaceaee0
Outcome
biased nucleotide conversion toward G, C, and Te0

Verbatim

e0

“A biased nucleotide conversion toward G, C, and T suggests a trend in the evolution of the Musaceae chloroplast genomes”

✓ located verbatim in the source · abstract, characters 641–760 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Phylogeny placed Ensete and Musella close together.

Taxon
Ensete and MusellaEnseteMusellae0
Outcome
close relationshipe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ensete
Ensete · Taxon · picture of the genus (one of its species)Myself (Renata3) · CC BY 2.5 · Wikimedia Commons ↗
Musella
Musella · Taxon · picture of the genus (one of its species)KENPEI · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Phylogenetic analysis revealed a close relationship between Ensete and Musella genera”

✓ located verbatim in the source · abstract, characters 762–847 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Phylogeny supported two Musa clades.

Taxon
MusaMusae0
Outcome
two cladese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Musa
Musa · Taxon · picture of the genus (one of its species)Forest & Kim Starr · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“confirmed the existence of two clades in the genus Musa”

✓ located verbatim in the source · abstract, characters 852–907 · show in text ↑