Paper · 2024 · International Journal of Molecular Sciences

Molecular Cloning and Functional Identification of a Pericarp- and Testa-Abundant Gene’s (AhN8DT-2) Promoter from Arachis hypogaea

Yasir Sharif; Yuhui Zhuang; Wenpin Xie; et al.

7
claims
13
verbatim quotes
0
citations
2
research areas
✓
Open access · cc-by

Abstract

Cultivated peanut (Arachis hypogaea L.) is a key oil- and protein-providing legume crop of the world. It is full of nutrients, and its nutrient profile is comparable to that of other nuts. Peanut is a unique plant as it showcases a pegging phenomenon, producing flowers above ground, and after fertilization, the developing peg enters the soil and produces seeds underground. This geocarpic nature of peanut exposes its seeds to soil pathogens. Peanut seeds are protected by an inedible pericarp and testa. The pericarp- and testa-specific promoters can be effectively used to improve the seed defense. We identified a pericarp- and testa-abundant expression gene (AhN8DT-2) from available transcriptome expression data, whose tissue-specific expression was further confirmed by the qRT-PCR. The 1827bp promoter sequence was used to construct the expression vector using the pMDC164 vector for further analysis. Quantitative expression of the GUS gene in transgenic Arabidopsis plants showed its high expression in the pericarp. GUS staining showed a deep blue color in the pericarp and testa. Cryostat sectioning of stained Arabidopsis seeds showed that expression is only limited to seed coat (testa), and staining was not present in cotyledons and embryos. GUS staining was not detected in any other tissues, including seedlings, leaves, stems, and roots, except for some staining in flowers. Under different phytohormones, this promoter did not show an increase in expression level. These results indicated that the AhN8DT-2 promoter drives GUS gene expression in a pericarp- and testa-specific manner. The identified promoter can be utilized to drive disease resistance genes, specifically in the pericarp and testa, enhancing peanut seed defense against soil-borne pathogens. This approach has broader implications for improving the resilience of peanut crops and other legumes, contributing to sustainable agricultural practices and food security.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

AhN8DT-2 was identified as abundantly expressed in pericarp and testa, with tissue specificity confirmed by qRT-PCR.

Taxon
Arachis hypogaeaArachis hypogaeat0
Organ / stage
pericarp and testae1
Gene
AhN8DT-2e0
Outcome
pericarp- and testa-abundant expressione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“We identified a pericarp- and testa-abundant expression gene (AhN8DT-2) from available transcriptome expression data, whose tissue-specific expression was further confirmed by the qRT-PCR.”

✓ located verbatim in the source · abstract, characters 603–791 · show in text ↑
e1

“GUS staining showed a deep blue color in the pericarp and testa.”

✓ located verbatim in the source · abstract, characters 1029–1093 · show in text ↑
t0

“Arachis hypogaea”

✓ located verbatim in the source · title, characters 114–130 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The AhN8DT-2 promoter drove high GUS expression in the pericarp of transgenic Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Organ / stage
pericarpe0
Gene
GUS genee0
Outcome
expression of the GUS genee0
Direction
highe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Quantitative expression of the GUS gene in transgenic Arabidopsis plants showed its high expression in the pericarp.”

✓ located verbatim in the source · abstract, characters 912–1028 · show in text ↑
t0

“AhN8DT-2”

✓ located verbatim in the source · title, characters 90–98 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

GUS staining was deep blue in the pericarp and testa.

Taxon
Arachis hypogaeaArachis hypogaeat0
Organ / stage
pericarp and testae0
Gene
GUSe0
Outcome
deep blue color in the pericarp and testae0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“GUS staining showed a deep blue color in the pericarp and testa.”

✓ located verbatim in the source · abstract, characters 1029–1093 · show in text ↑
t0

“Arachis hypogaea”

✓ located verbatim in the source · title, characters 114–130 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

In stained Arabidopsis seeds, expression was limited to the testa and absent in cotyledons and embryos.

Taxon
ArabidopsisArabidopsise0
Organ / stage
seed coat (testa)e0
Outcome
expression is only limited to seed coat (testa), and staining was not present in cotyledons and embryose0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cryostat sectioning of stained Arabidopsis seeds showed that expression is only limited to seed coat (testa), and staining was not present in cotyledons and embryos.”

✓ located verbatim in the source · abstract, characters 1094–1259 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GUS staining was absent from seedlings, leaves, stems and roots, with some staining in flowers.

Taxon
Arachis hypogaeaArachis hypogaeat0
Gene
GUSe0
Outcome
GUS staining was not detected in any other tissues, including seedlings, leaves, stems, and roots, except for some staining in flowerse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“GUS staining was not detected in any other tissues, including seedlings, leaves, stems, and roots, except for some staining in flowers.”

✓ located verbatim in the source · abstract, characters 1260–1395 · show in text ↑
t0

“Arachis hypogaea”

✓ located verbatim in the source · title, characters 114–130 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Different phytohormones did not increase promoter expression.

Taxon
Arachis hypogaeaArachis hypogaeat0
Treatment
different phytohormonese0
Outcome
expression levele0
Direction
did not show an increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“Under different phytohormones, this promoter did not show an increase in expression level.”

✓ located verbatim in the source · abstract, characters 1396–1486 · show in text ↑
t0

“Arachis hypogaea”

✓ located verbatim in the source · title, characters 114–130 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors propose using the promoter to drive disease resistance genes in the pericarp and testa.

Organ / stage
pericarp and testae0
Gene
disease resistance genese0
Outcome
drive disease resistance genes, specifically in the pericarp and testae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“The identified promoter can be utilized to drive disease resistance genes, specifically in the pericarp and testa, enhancing peanut seed defense against soil-borne pathogens.”

✓ located verbatim in the source · abstract, characters 1607–1781 · show in text ↑

class · molecular: expression · Arachis hypogaea (peanut)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. no effect
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.