Paper · 2021 · The Crop Journal

Genome-wide investigation of defensin genes in peanut (Arachis hypogaea L.) reveals AhDef2.2 conferring resistance to bacterial wilt

Kai Zhao; Rui Ren; Xingli Ma; et al.

10
claims
19
verbatim quotes
39
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Peanut (Arachis hypogea L.) bacterial wilt (BW) is a devastating disease caused by Ralstonia solanacearum that results in severe yield and quality losses. Plant defensins are short cysteine-rich peptides with antimicrobial activity. The role of defensin genes (AhDef) in peanut is unclear. A genome-wide investigation of AhDef genes was undertaken, and 12 identified AhDef genes were classified into two groups containing the gamma-thionin domain formed by four disulfide pairs: Cys1-Cys8, Cys2-Cys5, Cys3-Cys6, and Cys4-Cys7. In silico analysis revealed that AhDef genes showed highly conserved architectural features and contained cis-elements associated with phytohormone signaling and defense responses. A highly resistant cultivar, H108 (R) and a susceptible accession, H107 (S) were tested by R. solanacearum inoculation. H108 (R) showed fewer symptoms than H107 (S) owing to inhibition of bacterial reproduction and spread in the vascular bundles of roots and stems. In a transcriptomic expression profile, AhDef genes, particularly AhDef1.6 and AhDef2.2, were up-regulated in H108 (R) compared with H107 (S) under R. solanacearum infection and phytohormone treatment. Subcellular localization showed that the AhDef1.6 and AhDef2.2 proteins were both expressed specifically on the plasma membrane. Overexpression of protein fusion AhDef2.2-YFP in Nicotiana benthamiana and peanut leaves increased resistance to R. solanacearum, suggesting its role in response to BW infection. AhDef2.2 may be valuable for peanut resistance breeding.

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Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

Twelve AhDef genes were identified in peanut and classified into two groups containing the gamma-thionin domain.

Gene
AhDefe1
Outcome
classified into two groups containing the gamma-thionin domaine1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e1

“12 identified AhDef genes were classified into two groups containing the gamma-thionin domain formed by four disulfide pairs”

✓ located verbatim in the source · abstract, characters 353–477 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

AhDef genes showed highly conserved architectural features in silico.

Gene
AhDefe2
Outcome
highly conserved architectural featurese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e2

“AhDef genes showed highly conserved architectural features”

✓ located verbatim in the source · abstract, characters 560–618 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

AhDef genes contained cis-elements associated with phytohormone signaling and defense responses.

Gene
AhDefe3
Outcome
cis-elements associated with phytohormone signaling and defense responsese3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e3

“AhDef genes showed highly conserved architectural features and contained cis-elements associated with phytohormone signaling and defense responses”

✓ located verbatim in the source · abstract, characters 560–706 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Resistant cultivar H108 (R) showed fewer bacterial wilt symptoms than susceptible accession H107 (S) after Ralstonia solanacearum inoculation.

Material
H108 (R)e5
Treatment
R. solanacearum inoculatione4
Interactor
R. solanacearumRalstonia solanacearume4pathogen
Outcome
symptomse5
Direction
fewere5
Comparator
H107 (S)e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗
Ralstonia solanacearum
Ralstonia solanacearum · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e4

“A highly resistant cultivar, H108 (R) and a susceptible accession, H107 (S) were tested by R. solanacearum inoculation”

✓ located verbatim in the source · abstract, characters 708–826 · show in text ↑
e5

“H108 (R) showed fewer symptoms than H107 (S)”

✓ located verbatim in the source · abstract, characters 828–872 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

In H108 (R), Ralstonia solanacearum reproduction and spread in the vascular bundles of roots and stems were inhibited.

Material
H108 (R)e4
Interactor
R. solanacearumRalstonia solanacearume4pathogen
Outcome
bacterial reproduction and spread in the vascular bundles of roots and stemse6
Direction
inhibitione6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗
Ralstonia solanacearum
Ralstonia solanacearum · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e4

“A highly resistant cultivar, H108 (R) and a susceptible accession, H107 (S) were tested by R. solanacearum inoculation”

✓ located verbatim in the source · abstract, characters 708–826 · show in text ↑
e6

“inhibition of bacterial reproduction and spread in the vascular bundles of roots and stems”

✓ located verbatim in the source · abstract, characters 882–972 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

AhDef1.6 and AhDef2.2 were up-regulated in H108 (R) compared with H107 (S) under R. solanacearum infection and phytohormone treatment in a transcriptomic expression profile.

Material
H108 (R)e7
Treatment
R. solanacearum infection and phytohormone treatmente7
Interactor
R. solanacearumRalstonia solanacearume7pathogen
Gene
AhDef1.6 and AhDef2.2e7
Outcome
expressione7
Direction
up-regulatede7
Comparator
H107 (S)e7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗
Ralstonia solanacearum
Ralstonia solanacearum · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e7

“In a transcriptomic expression profile, AhDef genes, particularly AhDef1.6 and AhDef2.2, were up-regulated in H108 (R) compared with H107 (S) under R. solanacearum infection and phytohormone treatment”

✓ located verbatim in the source · abstract, characters 974–1174 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

AhDef1.6 and AhDef2.2 proteins were localized specifically on the plasma membrane.

Gene
AhDef1.6 and AhDef2.2e1
Outcome
Subcellular localizatione1
Qualifier
expressed specifically on the plasma membranee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“Peanut (Arachis hypogea L.)”

✓ located verbatim in the source · abstract, characters 0–27 · show in text ↑
e1

“Subcellular localization showed that the AhDef1.6 and AhDef2.2 proteins were both expressed specifically on the plasma membrane”

✓ located verbatim in the source · abstract, characters 1176–1303 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Overexpression of AhDef2.2-YFP in Nicotiana benthamiana increased resistance to Ralstonia solanacearum.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Treatment
Overexpression of protein fusion AhDef2.2-YFPe1
Interactor
R. solanacearumRalstonia solanacearume1pathogen
Gene
AhDef2.2-YFPe1
Outcome
resistancee1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗
Ralstonia solanacearum
Ralstonia solanacearum · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e1

“Overexpression of protein fusion AhDef2.2-YFP in Nicotiana benthamiana and peanut leaves increased resistance to R. solanacearum”

✓ located verbatim in the source · abstract, characters 1305–1433 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Overexpression of AhDef2.2-YFP in peanut leaves increased resistance to Ralstonia solanacearum.

Organ / stage
leavese1
Treatment
Overexpression of protein fusion AhDef2.2-YFPe1
Interactor
R. solanacearumRalstonia solanacearume1pathogen
Gene
AhDef2.2-YFPe1
Outcome
resistancee1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗
Ralstonia solanacearum
Ralstonia solanacearum · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e1

“Overexpression of protein fusion AhDef2.2-YFP in Nicotiana benthamiana and peanut leaves increased resistance to R. solanacearum”

✓ located verbatim in the source · abstract, characters 1305–1433 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

AhDef2.2 may be valuable for peanut resistance breeding.

Gene
AhDef2.2e1
Outcome
resistance breedinge1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e1

“AhDef2.2 may be valuable for peanut resistance breeding”

✓ located verbatim in the source · abstract, characters 1484–1539 · show in text ↑

Ralstonia solanacearum · molecular: expression · Arachis hypogaea (peanut)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

class · molecular: expression · Arachis hypogaea (peanut)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

2 in the opposite direction

  1. no effect
  2. no effect
See all 3 papers →

infection · molecular: expression · Arachis hypogaea (peanut)Positive and negative results

6 papers: 5 positive, 1 negative or no effect

4 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
  3. positive

2 papers more in this group

See all 6 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.