Paper · 2025 · Horticulturae

Genome-Wide Identification and Characterization of Trehalose-6-Phosphate Synthase/Phosphatases Gene Family in Petunia and Their Expression Profiling Under Abiotic Stresses

Renwei Huang; Daofeng Liu; Gonzalo H. Villarino; et al.

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verbatim quotes
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citations
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Open access · cc-by

Abstract

Trehalose is a nonreducing disaccharide critical for cellular integrity and stress adaptation in plants, and its synthesis relies on trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP). Despite their established roles in abiotic stress responses across model plants, these gene families remain underexplored in ornamental species like Petunia hybrida. Here, TPS and TPP genes in two wild petunia progenitors, P. axillaris and P. inflata, underwent a genome-wide analysis, with 10 TPS and 8–9 TPP genes being identified in each species. According to phylogenetic analysis, petunia TPS proteins cluster into two clades, while TPP proteins were classified into three clades, showing closer evolutionary ties to tomato homologs. Cis-acting elements profiling identified hormone- and stress-responsive regulatory elements (e.g., ABRE, TC-rich repeats). Expression analysis under drought, heat, and salt stress revealed dynamic temporal regulation. For instance, PaTPS4/PaTPS9 were early responders (peak at 6 h) under drought and salt stress, while PaTPS8 exhibited sustained upregulation during salt treatment. Heat stress uniquely suppressed PaTPS1,2 and PaTPP1, contrasting with broad upregulation of other members. Notably, PaTPP3 displayed delayed induction under heat. These findings underscore the functional diversity within TPS/TPP families, with specific members governing stress-specific responses. This study provides a foundational resource for leveraging these genes to enhance stress resilience and ornamental value in petunia.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Genome-wide analysis identified 10 TPS and 8-9 TPP genes in each of the wild petunia progenitors P. axillaris and P. inflata.

Taxon
petunia progenitorse0
Gene
TPS and TPP genese0
Outcome
genes being identifiede0
Value
10 TPS and 8–9 TPP genese0

Verbatim

e0

“TPS and TPP genes in two wild petunia progenitors, P. axillaris and P. inflata, underwent a genome-wide analysis, with 10 TPS and 8–9 TPP genes being identified in each species”

✓ located verbatim in the source · abstract, characters 387–563 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Petunia TPS proteins cluster into two clades in phylogenetic analysis.

Taxon
petuniaPetuniae0
Gene
TPS proteinse0
Outcome
cluster into two cladese0
Value
two cladese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“petunia TPS proteins cluster into two clades”

✓ located verbatim in the source · abstract, characters 601–645 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Petunia TPP proteins were classified into three clades and showed closer evolutionary ties to tomato homologs.

Taxon
PetuniaPetuniat0
Gene
TPP proteinse0
Outcome
classified into three cladese0
Value
three cladese0
Comparator
tomato homologse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“TPP proteins were classified into three clades, showing closer evolutionary ties to tomato homologs”

✓ located verbatim in the source · abstract, characters 653–752 · show in text ↑
t0

“Petunia”

✓ located verbatim in the source · title, characters 110–117 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Cis-acting element profiling identified hormone- and stress-responsive regulatory elements in petunia TPS/TPP genes.

Taxon
PetuniaPetuniat0
Outcome
hormone- and stress-responsive regulatory elementse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Cis-acting elements profiling identified hormone- and stress-responsive regulatory elements”

✓ located verbatim in the source · abstract, characters 754–845 · show in text ↑
t0

“Petunia”

✓ located verbatim in the source · title, characters 110–117 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PaTPS4 and PaTPS9 were early responders under drought and salt stress, peaking at 6 h.

Taxon
PetuniaPetuniat0
Treatment
drought and salt stresse0
Gene
PaTPS4/PaTPS9e0
Outcome
early responderse0
Value
6 he0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“PaTPS4/PaTPS9 were early responders (peak at 6 h) under drought and salt stress”

✓ located verbatim in the source · abstract, characters 986–1065 · show in text ↑
t0

“Petunia”

✓ located verbatim in the source · title, characters 110–117 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PaTPS8 showed sustained upregulation during salt treatment.

Taxon
PetuniaPetuniat0
Treatment
salt treatmente0
Gene
PaTPS8e0
Outcome
sustained upregulatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“PaTPS8 exhibited sustained upregulation during salt treatment”

✓ located verbatim in the source · abstract, characters 1073–1134 · show in text ↑
t0

“Petunia”

✓ located verbatim in the source · title, characters 110–117 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Heat stress uniquely suppressed PaTPS1,2 and PaTPP1, in contrast to broad upregulation of other members.

Taxon
PetuniaPetuniat0
Treatment
Heat stresse0
Gene
PaTPS1,2 and PaTPP1e0
Outcome
suppressede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Heat stress uniquely suppressed PaTPS1,2 and PaTPP1, contrasting with broad upregulation of other members”

✓ located verbatim in the source · abstract, characters 1136–1241 · show in text ↑
t0

“Petunia”

✓ located verbatim in the source · title, characters 110–117 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PaTPP3 displayed delayed induction under heat.

Taxon
PetuniaPetuniat0
Treatment
heate0
Gene
PaTPP3e0
Outcome
delayed inductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“PaTPP3 displayed delayed induction under heat”

✓ located verbatim in the source · abstract, characters 1252–1297 · show in text ↑
t0

“Petunia”

✓ located verbatim in the source · title, characters 110–117 · show in text ↑