Paper · 2025 · Frontiers in Microbiology

Biocontrol potential and comparative genomic analysis of two Bacillus velezensis strains against sclerotinosis in mulberry fruit

Fangfang Peng; Xunlan Li; Zhaoxin Wei; et al.

12
claims
12
verbatim quotes
3
citations
4
research areas
✓
Open access · cc-by

Abstract

Mulberry trees ( Morus spp.), a dual-purpose crop with nutritional and medicinal value, faces significant production constraints due to sclerotinosis. Two strains of Bacillus velezensis (JT-3 and JD-3) were isolated, demonstrating strong inhibitory effects against the sclerotinia pathogen (56.06% for JT-3 and 75.42% for JD-3). These strains effectively suppressed sclerotium formation and germination, achieving a complete inhibition rate. Field trials and growth promotion experiments showed that disease incidence in mulberry fruit could be reduced by up to 75.72%, with significant improvements observed in plant height, stem thickness, leaf number, root length, root weight, and above-ground biomass compared to the control group. Oxford Nanopore Technologies (ONT) sequencing showed the genome of JT-3 consists of a single circular chromosome with a size of 3.85 Mb, while the genome of JD-3 comprises a circular chromosome and a plasmid, with a total size of 4.12 Mb, including a plasmid of 35.7 kb. Both strains exhibit the capacity to secrete antifungal Carbohydrate-Active Enzymes (CAZymes) such as lysozyme and chitinase. Comparative genomics identified JD-3-specific enrichments in flagellar motility, hydrolase systems, antimicrobial defense clusters. Additionally, Both strains harbored 12 The biosynthetic gene clusters (BGCs), with JD-3 uniquely encoding plantazolicin synthesis. These findings provide foundational insights for developing Bacillus -based bioformulations while opening new avenues for the health management of mulberry fruit.

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Claims 12

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

JT-3 inhibited the sclerotinia pathogen by 56.06%.

Material
JT-3e0
Interactor
sclerotinia pathogene0pathogen
Second interactor
Bacillus velezensisBacillus velezensise0biocontrol_agent
Outcome
inhibitory effects against the sclerotinia pathogene0
Value
56.06%e0

Not reportedTaxon

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Bacillus velezensis
Bacillus velezensis · Second interactorMarinka Pavlova · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Two strains of Bacillus velezensis (JT-3 and JD-3) were isolated, demonstrating strong inhibitory effects against the sclerotinia pathogen (56.06% for JT-3 and 75.42% for JD-3)”

✓ located verbatim in the source · abstract, characters 151–327 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

JD-3 inhibited the sclerotinia pathogen by 75.42%.

Material
JD-3e0
Interactor
sclerotinia pathogene0pathogen
Second interactor
Bacillus velezensisBacillus velezensise0biocontrol_agent
Outcome
inhibitory effects against the sclerotinia pathogene0
Value
75.42%e0

Not reportedTaxon

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Bacillus velezensis
Bacillus velezensis · Second interactorMarinka Pavlova · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Two strains of Bacillus velezensis (JT-3 and JD-3) were isolated, demonstrating strong inhibitory effects against the sclerotinia pathogen (56.06% for JT-3 and 75.42% for JD-3)”

✓ located verbatim in the source · abstract, characters 151–327 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The strains completely inhibited sclerotium formation and germination.

Outcome
sclerotium formation and germinatione0
Direction
suppressede0

Not reportedTaxon

Verbatim

e0

“These strains effectively suppressed sclerotium formation and germination, achieving a complete inhibition rate”

✓ located verbatim in the source · abstract, characters 329–440 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Field treatments reduced mulberry fruit disease incidence by up to 75.72%.

Taxon
mulberrye0
Organ / stage
fruite0
Outcome
disease incidencee0
Direction
reducede0
Value
75.72%e0

Not reportedTreatmentComparator

Verbatim

e0

“disease incidence in mulberry fruit could be reduced by up to 75.72%”

✓ located verbatim in the source · abstract, characters 500–568 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

The strains significantly improved plant height, stem thickness, and leaf number.

Outcome
plant height, stem thickness, leaf numbere0
Direction
improvementse0
Comparator
control groupe0

Not reportedTaxonTreatment

Verbatim

e0

“significant improvements observed in plant height, stem thickness, leaf number, root length, root weight, and above-ground biomass compared to the control group”

✓ located verbatim in the source · abstract, characters 575–735 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

The strains significantly improved root length, root weight, and above-ground biomass.

Outcome
root length, root weight, and above-ground biomasse0
Direction
improvementse0
Comparator
control groupe0

Not reportedTaxonTreatment

Verbatim

e0

“significant improvements observed in plant height, stem thickness, leaf number, root length, root weight, and above-ground biomass compared to the control group”

✓ located verbatim in the source · abstract, characters 575–735 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

JT-3 had a 3.85 Mb circular chromosome.

Material
JT-3e0
Outcome
single circular chromosomee0
Value
3.85 Mbe0

Not reportedTaxon

Verbatim

e0

“the genome of JT-3 consists of a single circular chromosome with a size of 3.85 Mb”

✓ located verbatim in the source · abstract, characters 790–872 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

JD-3 genome totaled 4.12 Mb, including a 35.7 kb plasmid.

Material
JD-3e0
Outcome
total sizee0
Value
4.12 Mbe0

Not reportedTaxon

Verbatim

e0

“the genome of JD-3 comprises a circular chromosome and a plasmid, with a total size of 4.12 Mb, including a plasmid of 35.7 kb”

✓ located verbatim in the source · abstract, characters 880–1006 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Both strains could secrete antifungal lysozyme and chitinase.

Gene
lysozyme and chitinasee0
Outcome
capacity to secrete antifungal Carbohydrate-Active Enzymes (CAZymes)e0

Not reportedTaxon

Verbatim

e0

“Both strains exhibit the capacity to secrete antifungal Carbohydrate-Active Enzymes (CAZymes) such as lysozyme and chitinase”

✓ located verbatim in the source · abstract, characters 1008–1132 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

JD-3 had unique enrichment in motility, hydrolase, and defense clusters.

Material
JD-3e0
Outcome
enrichments in flagellar motility, hydrolase systems, antimicrobial defense clusterse0

Not reportedTaxon

Verbatim

e0

“JD-3-specific enrichments in flagellar motility, hydrolase systems, antimicrobial defense clusters”

✓ located verbatim in the source · abstract, characters 1166–1264 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Both strains harbored 12 biosynthetic gene clusters.

Outcome
biosynthetic gene clusters (BGCs)e0
Value
12e0

Not reportedTaxon

Verbatim

e0

“Both strains harbored 12 The biosynthetic gene clusters (BGCs)”

✓ located verbatim in the source · abstract, characters 1280–1342 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

JD-3 uniquely encoded plantazolicin synthesis.

Material
JD-3e0
Outcome
plantazolicin synthesise0

Not reportedTaxon

Verbatim

e0

“JD-3 uniquely encoding plantazolicin synthesis”

✓ located verbatim in the source · abstract, characters 1349–1395 · show in text ↑