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Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

Gene OscilloScope tracks expression changes across experiments and identifies expression patterns.

Taxon
plantsViridiplantaet0
Outcome
gene expression changese0
Value
many different experimentse0

Verbatim

e0

“track how gene expression changes across many different experiments using the Gene OscilloScope. This tool can identify interesting expression patterns”

✓ located verbatim in the source · abstract, characters 1218–1369
t0

“plants”

✓ located verbatim in the source · title, characters 38–44

Title

PLEXdb: gene expression resources for plants and plant pathogens

S. Dash; J. Van Hemert; L. Hong; et al. Nucleic Acids Research 2011. doi:10.1093/nar/gkr938

Other claims from this paper (3)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Daily sampling captured subtle changes in cotton fiber gene expression.

Taxon
Gossypium hirsutum (cotton)Gossypium hirsutumt0
Outcome
Subtle gene expression changese0

Not reportedComparator

Verbatim

e0

“Subtle gene expression changes are captured by the daily sampling”

✓ located verbatim in the source · abstract, characters 965–1030
t0

“Gossypium hirsutum (cotton)”

✓ located verbatim in the source · title, characters 50–77

Title

A high-resolution model of gene expression during Gossypium hirsutum (cotton) fiber development

Corrinne E. Grover; Josef J. Jareczek; Sivakumar Swaminathan; et al. BMC Genomics 2025. doi:10.1186/s12864-025-11360-z

Other claims from this paper (4)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Real-time PCR validated microarray gene expression changes.

Taxon
Soybean Sproutst0
Outcome
gene expression changese0
Comparator
microarray analysise0

Verbatim

e0

“gene expression changes indicated by microarray analysis were validated by real-time PCR”

✓ located verbatim in the source · abstract, characters 1338–1426
t0

“Soybean Sprouts”

✓ located verbatim in the source · title, characters 29–44

Title

Gene Expression Profiling in Soybean Sprouts With Elevated Disease Resistance Against Pseudomonas Putida Infection

Radhika Dhakal; Muhammad Fazle Rabbee; Md Sarafat Ali; et al. Bangladesh Journal of Botany 2023. doi:10.3329/bjb.v52i1.65243

Other claims from this paper (6)
Method / resourceobservedoriginal resultsimulated

Claim · model-written summary

Simulated mutants produced experimentally validated organ expression changes.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Outcome
changes in organ expression patternse0
Comparator
experimentally validatede0

Verbatim

e0

“simulated mutants produce experimentally validated changes in organ expression patterns”

✓ located verbatim in the source · abstract, characters 801–888
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 76–96

Title

Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana

Kerstin Kaufmann; Masao Nagasaki; Ruy Jáuregui In Silico Biology 2010. doi:10.3233/isb-2010-0414

Other claims from this paper (6)
Method / resourceobservedoriginal resultsimulated

Claim · model-written summary

Simulated mutants produced experimentally validated changes in organ expression.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Outcome
experimentally validated changes in organ expression patternse0

Not reportedComparatorDirectionValue

Verbatim

e0

“simulated mutants produce experimentally validated changes in organ expression patterns”

✓ located verbatim in the source · abstract, characters 801–888
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 76–96

Title

Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana

Kaufmann Kerstin; Nagasaki Masao; Já et al. Studies in health technology and informatics 2011. doi:10.3233/978-1-60750-704-8-279

Other claims from this paper (5)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Expression changes of specific miRNAs were validated by qRT-PCR and northern blotting in Aechmea fasciata.

Taxon
Aechmea fasciataAechmea fasciatae0
Outcome
Expression changes of specific miRNAse1

Not reportedComparator

Verbatim

e0

“Aechmea fasciata”

✓ located verbatim in the source · abstract, characters 339–355
e1

“Expression changes of specific miRNAs were validated by qRT-PCR and northern blotting.”

✓ located verbatim in the source · abstract, characters 543–629

Title

4.低温菌Janthinobacterium lividumの巨大NAD依存性グルタミン酸脱水素酵素 : 遺伝子クローニングと機能解析(第409回研究協議会研究発表要旨,ビタミンB研究委員会)

敏久 大島; 竜巳 川上; 春彦 櫻庭 ビタミン 2007. doi:10.1038/s41598-020-63597-1

Other claims from this paper (6)
Method / resourceobservedoriginal resultmixedmeasured

Claim · model-written summary

Changes in gene expression under Fe deficiency could be confirmed, although changes in enzyme activity matching literature reports were not always confirmed.

Outcome
changes in gene expression could be confirmede4
Comparator
literature reportse4

Verbatim

e4

“Confirmation of literature reports, particularly for changes in enzyme activity, was not always possible, but changes in gene expression could be confirmed”

✓ located verbatim in the source · abstract, characters 495–650

Title

Response of Arabidopsis to Iron Deficiency Stress as Revealed by Microarray Analysis

O. Thimm PLANT PHYSIOLOGY 2001. doi:10.1104/pp.127.3.1030

Other claims from this paper (5)
Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

The parabolic-flight platform allowed detection of gene expression changes within typical experiment time frames.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Outcome
gene expression changes can be observede0
Comparator
typical parabolic flight experimentse0

Not reportedValue

Verbatim

e0

“gene expression changes can be observed in the time frames of typical parabolic flight experiments”

✓ located verbatim in the source · abstract, characters 1616–1714
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 64–84
t1

“Parabolic Flight”

✓ located verbatim in the source · title, characters 0–16

Title

Parabolic Flight Induces Changes in Gene Expression Patterns in Arabidopsis thaliana

Anna-Lisa Paul; Michael S. Manak; John D. Mayfield; et al. Astrobiology 2011. doi:10.1089/ast.2011.0659

Other claims from this paper (7)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

The assay detected gene expression changes sensitively in limiting tissue amounts.

Taxon
Arabidopsis (Arabidopsis thaliana)Arabidopsis thalianae1
Outcome
sensitivity of detection of changes in gene expressione0
Qualifier
limiting amounts of tissuee0

Not reportedComparatorValue

Verbatim

e0

“sensitivity of detection of changes in gene expression within limiting amounts of tissue”

✓ located verbatim in the source · abstract, characters 563–651
e1

“Arabidopsis (Arabidopsis thaliana) plants”

✓ located verbatim in the source · abstract, characters 377–418

Title

18aRH-12 AAA蛋白の多次元尺度構成法による分類

善弘 田口; 克嗣 大野 日本物理学会講演概要集 2001. doi:10.1104/pp.107.098681

Other claims from this paper (3)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

PCR validated opposite expression changes in six targets.

Taxon
PongamiaPongamiae2
Outcome
opposite expression changes of six targetse0
Direction
oppositee0
Value
sixe0

Verbatim

e0

“as well as the opposite expression changes of six targets”

✓ located verbatim in the source · abstract, characters 1230–1287
e1

“Quantitative Real-Time PCR validated the expression changes of 15 DEmiRs”

✓ located verbatim in the source · abstract, characters 1157–1229
e2

“Pongamia seeds sampled at three developmental phases”

✓ located verbatim in the source · abstract, characters 572–624

Title

Unravelling the MicroRNA-Mediated Gene Regulation in Developing Pongamia Seeds by High-Throughput Small RNA Profiling

Ye Jin; Lin Liu; Xuehong Hao; et al. International Journal of Molecular Sciences 2019. doi:10.3390/ijms20143509

Other claims from this paper (7)

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