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Associationobservedoriginal resultmeasured

Claim · model-written summary

Presence or absence changes in TF expression were more likely associated with target gene expression changes than quantitative TF expression changes.

Taxon
MaizeZea mayst0
Gene
TFe0
Outcome
changes in target gene expressione0
Direction
more likelye0
Comparator
quantitative changes in TF gene expressione0

Verbatim

e0

“presence/absence changes rather than quantitative changes in TF gene expression are more likely associated with changes in target gene expression”

✓ located verbatim in the source · abstract, characters 905–1050
t0

“Maize”

✓ located verbatim in the source · title, characters 33–38

Title

Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions

Peng Zhou; Zhi Li; Erika Magnusson; et al. The Plant Cell 2020. doi:10.1105/tpc.20.00080

Other claims from this paper (4)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Changes in star pattern corresponded with gene expression changes.

Taxon
PetuniaPetuniat0
Outcome
gene expressione0
Qualifier
changes in the star patterne0
Comparator
star patterne0

Not reportedGeneOrgan / stageDirection

Verbatim

e0

“These changes in the star pattern corresponded to changes in gene expression.”

✓ located verbatim in the source · abstract, characters 692–769
t0

“Petunia ×hybrida Vilm”

✓ located verbatim in the source · title, characters 40–61

Title

Gene Expression in the Star Mutation of Petunia ×hybrida Vilm

Robert J. Griesbach; Ronald M. Beck; John Hammond; et al. Journal of the American Society for Horticultural Science 2007. doi:10.21273/jashs.132.5.680

Other claims from this paper (4)
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

PHE1 and MEA expression changes could not be fully explained by FIS2 expression changes.

Gene
FIS2e0
Outcome
changes of PHE1 and MEA expressione0
Qualifier
could not be fully accounted fore0

Not reportedTaxon

Verbatim

e0

“the changes of PHE1 and MEA expression could not be fully accounted for by the corresponding fluctuations of FIS2 expression”

✓ located verbatim in the source · abstract, characters 1243–1367

Title

Parental Genome Dosage Imbalance Deregulates Imprinting in Arabidopsis

Pauline E. Jullien; Frédéric Berger PLoS Genetics 2010. doi:10.1371/journal.pgen.1000885

Other claims from this paper (2)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Polyphenol changes aligned with changes in gene expression.

Taxon
kiwifruitActinidia deliciosat0
Outcome
changes in gene expressione0
Qualifier
aligned withe0

Not reportedOrgan / stageDirection

Verbatim

e0

“which aligned with observed changes in gene expression”

✓ located verbatim in the source · abstract, characters 1616–1670
t0

“kiwifruit”

✓ located verbatim in the source · title, characters 49–58

Title

Uncovering the hidden dynamics of pollination in kiwifruit maturity and ripening

Marios Georgios Kollaros; Michail Michailidis; Alexandra Poulouktsi; et al. Postharvest Biology and Technology 2025. doi:10.1016/j.postharvbio.2025.113763

Other claims from this paper (12)
Associationobservedoriginal resultmeasured

Claim · model-written summary

ROS content changes during seed imbibition were related to expression pattern changes.

Organ / stage
seede0
Outcome
changes in expression patterne0

Not reportedTaxonDirection

Verbatim

e0

“changes in ROS content during seed imbibition are also related to changes in expression pattern”

✓ located verbatim in the source · abstract, characters 716–811

Title

ROS Signaling in Seed Dormancy Alleviation

Hayat El-Maarouf Bouteau; Claudette Job; Dominique Job; et al. Plant Signaling & Behavior 2007. doi:10.4161/psb.2.5.4460

Other claims from this paper (4)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Changes in amino acid pools correlated with gene expression changes.

Taxon
poplarPopulust0
Gene
these genese0
Outcome
changes in expression profilese0

Not reportedDirection

Verbatim

e0

“which were correlated with the observed changes in expression profiles for these genes”

✓ located verbatim in the source · abstract, characters 687–773
t0

“poplar”

✓ located verbatim in the source · title, characters 75–81

Title

Gene expression associated with N‐induced shifts in resource allocation in poplar

J. E. K. COOKE; K. A. BROWN; R. WU; et al. Plant Cell & Environment 2003. doi:10.1046/j.1365-3040.2003.01012.x

Other claims from this paper (4)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer that changes in hypocotyl elongation reflect changes in AtEXPA5 expression.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
AtEXPA5e0
Outcome
hypocotyl elongatione0
Qualifier
reflect changes in AtEXPA5 expressione0

Verbatim

e0

“implying that changes in hypocotyl elongation reflect changes in AtEXPA5 expression”

✓ located verbatim in the source · abstract, characters 557–640
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 50–70

Title

Ethylene negatively regulates EXPA5 expression in Arabidopsis thaliana

Seung‐Hyun Son; Soo Chul Chang; Chan Ho Park; et al. Physiologia Plantarum 2011. doi:10.1111/j.1399-3054.2011.01552.x

Other claims from this paper (9)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Most BR-responsive phosphorylation changes were not driven by gene expression changes.

Taxon
ArabidopsisArabidopsist0
Gene
gene expression changese0
Outcome
phosphorylation changese0

Not reportedDirection

Verbatim

e0

“we found most of phosphorylation changes were not led by gene expression changes.”

✓ located verbatim in the source · abstract, characters 1898–1979
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 112–123

Title

Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis

Li-Ling Lin; Chia-Lang Hsu; Chia-Wei Hu; et al. BMC Genomics 2015. doi:10.1186/s12864-015-1753-4

Other claims from this paper (12)
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Changes in petal physiology from ethylene exposure may result from rapid changes in gene expression.

Outcome
changes in petal physiologye1
Qualifier
rapid changes in gene expressione1

Verbatim

t0

“Carnation Petals”

✓ located verbatim in the source · title, characters 36–52
e1

“changes in petal physiology resulting from exposure to ethylene may be the result of rapid changes in gene expression”

✓ located verbatim in the source · abstract, characters 1451–1568

Title

Ethylene-Induced Gene Expression in Carnation Petals

William R. Woodson; Kay A. Lawton PLANT PHYSIOLOGY 1988. doi:10.1104/pp.87.2.498

Other claims from this paper (9)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Gene expression changes accompanied methylation changes.

Gene
CHSt0
Outcome
methylation statuse0

Not reportedDirection

Verbatim

e0

“Gene expression changes were accompanied by changes in its methylation status”

✓ located verbatim in the source · abstract, characters 1717–1794
t0

“CHS Gene Expression in Flax”

✓ located verbatim in the source · title, characters 59–86

Title

Oligodeoxynucleotides Can Transiently Up- and Downregulate CHS Gene Expression in Flax by Changing DNA Methylation in a Sequence-Specific Manner

Magdalena Dzialo; Jan Szopa; Tadeusz Czuj; et al. Frontiers in Plant Science 2017. doi:10.3389/fpls.2017.00755

Other claims from this paper (7)

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