Search claims · PlantClaims

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

SSR polymorphism information content was 80%.

Taxon: appleMalus domesticat0
Outcome: polymorphism information content (PIC)e0
Value: 80%e0

Verbatim

e0
“polymorphism information content (PIC) was 80%.”
✓ located verbatim in the source · abstract, characters 530–577

t0
“apple cultivars/rootstocks”
✓ located verbatim in the source · title, characters 28–54

Title

Molecular identification of apple cultivars/rootstocks using SSR markers

Romina Jahromi Shirazi; Mansoure keshavarzi; Mohammad Reza Naqavi DOAJ (DOAJ: Directory of Open Access Journals) 2010. doi:10.22103/jab.2010.1155

Other claims from this paper (4)

Method / resource Five SSR loci produced 52 polymorphic alleles, averaging 10.4 per locus.
Observation SSR markers produced specific DNA bands in five named apple genotypes.
Observation SSR markers produced specific band patterns in listed apple genotypes.
Method / resource Twelve specific reproducible alleles were identified in rootstocks.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Polymorphism information content averaged 0.678.

Taxon: Lycium ruthenicumLycium ruthenicumt0
Outcome: polymorphism information content (PIC)e0
Value: 0.678e0

Verbatim

e0
“polymorphism information content (PIC) (0.678)”
✓ located verbatim in the source · abstract, characters 1330–1376

t0
“Lycium ruthenicum”
✓ located verbatim in the source · title, characters 73–90

Title

SSR information in transcriptome and development of molecular markers in Lycium ruthenicum

Yin Yue; An Wei; Zhao Jian-hua; et al. 浙江农林大学学报 2019. doi:10.11833/j.issn.2095-0756.2019.02.025

Other claims from this paper (19)

Observation The transcriptome contained 73 896 identified SSRs.
Observation SSRs occurred in 56 170 unigenes.
Observation SSR frequency was 26.36%.
Observation Average SSR density was one per 3.55 kb.
Observation Mononucleotide motifs comprised 74.33% of SSRs.
Observation Dinucleotide motifs comprised 13.30% of SSRs.
Observation Trinucleotide motifs comprised 11.81% of SSRs.
Observation The SSR loci included 84 repeat motifs with 5 to 33 iterations.
Observation A/T, AG/CT and AT/AT were among the most abundant repeat motifs.
Observation C/G and AAC/GTT were among the most abundant repeat motifs.
Method / resource The study designed 12 674 primer pairs from SSR loci.
Method / resource Of 128 tested primer pairs, 74 (57.8%) produced PCR products.
Method / resource Twenty-eight highly polymorphic SSR loci amplified 24 wolfberry accessions.
Observation The assay detected 256 alleles.
Observation Mean allele count was 9.1.
Observation Average major allele frequency was 0.432.
Observation Observed heterozygosity averaged 0.439.
Observation Expected heterozygosity averaged 0.712.
Recommendation The authors conclude transcriptome SSR markers can support diversity analysis and genetic map construction.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Polymorphism information content varied among cultivars.

Taxon: potatoSolanum tuberosumt0
Outcome: polymorphism information content(PIC)e0
Direction: diversitye0

Verbatim

e0
“the polymorphism information content(PIC) was diversity”
✓ located verbatim in the source · abstract, characters 613–668

t0
“potato”
✓ located verbatim in the source · title, characters 51–57

Title

Evaluation for adaptability of cultivars of exotic potato in Yunnan conditions.

Qiongfen Yang; Li XianPing; Lili Lu; et al. Xi'nan nongye xuebao 2009

Other claims from this paper (7)

Observation Most breeding and genetic traits differed significantly among European potato cultivars.
Observation Similarity to check potato cultivars differed.
Observation European potato cultivars were judged difficult to use directly under winter conditions in Yunnan.
Recommendation European cultivars could extend the genetic base for potato improvement.
Observation H-43 was similar to the Yunnan check cultivar.
Observation H-43 had better appearance traits for business.
Recommendation H-43 could be a useful Yunnan potato cultivar after product testing.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Average polymorphism information content was 0.5.

Taxon: barleyHordeum vulgaret0
Outcome: polymorphism information contente0
Value: 0.5e0

Verbatim

e0
“average polymorphism information content of 0.5”
✓ located verbatim in the source · abstract, characters 631–678

t0
“barley”
✓ located verbatim in the source · title, characters 45–51

Title

Genetic diversity analysis of North Africa’s barley using SSR markers

Amani Ben Naceur; Ramzi Chaabane; Mouldi El-Faleh; et al. Journal of Genetic Engineering and Biotechnology 2012. doi:10.1016/j.jgeb.2011.12.003

Other claims from this paper (7)

Observation Eleven SSR markers produced 478 reproducible bands.
Observation The SSR markers averaged 2.13 alleles per primer.
Observation The 31 accessions showed large genetic diversity and many groups.
Association Most accessions clustered by geographic origin, pedigree and agronomic or caryopsis characters.
Observation The diversity groups were judged useful for crop improvement.
Observation The groups support North Africa as a possible secondary barley origin center.
Mechanism Different growing conditions and uses may explain regional barley variability.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Average polymorphism information content was 0.595.

Taxon: SoybeanGlycine maxt0
Outcome: polymorphism information content (PIC)e0
Value: 0.595e0

Verbatim

e0
“average polymorphism information content (PIC) was 0.595”
✓ located verbatim in the source · abstract, characters 540–596

t0
“Soybean”
✓ located verbatim in the source · title, characters 21–28

Title

Genetic Diversity of Soybean Germplasm in Russia and China

PU Guo-feng 2008

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Polymorphism information content was 0.37.

Taxon: RiceOryza sativat0
Outcome: polymorphism information content(PIC)e0
Value: 0.37e0

Verbatim

e0
“The value of polymorphism information content(PIC)was 0.37”
✓ located verbatim in the source · abstract, characters 605–663

t0
“Rice”
✓ located verbatim in the source · title, characters 62–66

Title

Polymorphism Analysis for Four Mainly Restore Lines of Hybrid Rice with SSR Markers

Chen Jin-we; R China Fujian nongye xuebao 2014

Other claims from this paper (6)

Observation Hang1 and Hang2 differed from Minghui86 at 39 polymorphic loci, a 29.10% ratio.
Observation Alleles per locus ranged from one to four, averaging 2.1.
Observation Four restorer lines clustered into two groups.
Observation Hang 1 and Hang2 differed from Minghui 86 at a threshold of 0.87.
Observation Five polymorphism sites occurred among seven SSR marker pairs beside RM234.
Observation Bioinformatics indicated functionally important loci in Minghui 86 were mutated under space flight.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Polymorphism information content was 0.664.

Taxon: safflowerCarthamus tinctoriust0
Outcome: polymorphism information contente0
Value: 0.664e0

Verbatim

t0
“safflower”
✓ located verbatim in the source · title, characters 25–34

e0
“polymorphism information content (0.664)”
✓ located verbatim in the source · abstract, characters 533–573

Title

The genetic diversity of safflower (Carthamus tinctorius L.) genotypes developed by hybridization using SSR markers

Emrullah Culpan; Burhan Arslan Genetika 2022. doi:10.2298/gensr2203193c

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Mean polymorphism information content was 0.52.

Outcome: Polymorphism Information Content (PIC)e0
Value: 0.52e0

Not reportedTaxon

Verbatim

e0
“The average Polymorphism Information Content (PIC) was 0.52.”
✓ located verbatim in the source · abstract, characters 832–892

Title

Genetic variability in maize and teosinte populations estimated by microsatellites markers

Tatiana de Freitas Terra; Paula Wiethölter; Cícero Carlos de Souza Almeida; et al. Ciência Rural 2011. doi:10.1590/s0103-84782011005000005

Other claims from this paper (6)

Observation Most genetic variation was within populations.
Observation Microsatellites identified 92 alleles at 25 loci.
Observation Mean alleles per locus was 3.7.
Observation Polymorphic loci were 64% in BR400 and Pampa.
Observation Polymorphic loci were 80% in teosinte.
Observation Genetic distance confirmed genomic similarity between maize and teosinte.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Average polymorphism information content was 0.4663.

Taxon: Soft Wheatt0
Outcome: polymorphism information contente0
Value: 0.4663e0

Verbatim

e0
“The average polymorphism information content was 0.4663.”
✓ located verbatim in the source · abstract, characters 641–697

t0
“Soft Wheat”
✓ located verbatim in the source · title, characters 54–64

Title

Association Analysis of Solvent Retention Capacity in Soft Wheat

Zhang Yon 2015

Other claims from this paper (14)

Observation SSR screening amplified 1340 fragments.
Observation SSR loci averaged 5.5 alleles each.
Association Thirteen loci were associated with lactic acid SRC.
Association Seven loci were associated with water SRC.
Association Six loci were associated with sucrose SRC.
Association Two loci were associated with sodium carbonate SRC.
Association Individual associated loci explained 3.19%–21.84% of phenotypic variation.
Association Marker gwm642 was associated with water SRC in all three years.
Association The allele gwm642-A186 was associated with reduced water SRC.
Association The allele gwm642-A188 was associated with reduced water SRC.
Association The allele gwm337-A178 was associated with reduced water SRC.
Association The allele gwm337-A178 was associated with reduced sucrose SRC.
Association The allele gwm337-A186 was associated with reduced sucrose SRC.
Association The allele cfa2257-A129 was associated with reduced sodium carbonate SRC.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Mean polymorphism information content was 0.55.

Taxon: MaizeZea mayst0
Outcome: Mean polymorphism information contente0
Value: 0.55e0

Verbatim

e0
“Mean polymorphism information content was 0.55.”
✓ located verbatim in the source · abstract, characters 338–385

t0
“Maize”
✓ located verbatim in the source · title, characters 38–43

Title

Heterotic Grouping of Quality Protein Maize Inbreds Divided by SSR Markers

Fan Xing ACTA AGRONOMICA SINICA 2003

Other claims from this paper (8)

Method / resource Thirty-nine polymorphic SSR primers detected 134 alleles among maize lines.
Method / resource The 22 inbred lines were classified into five heterotic groups.
Observation Group 1 was Luda Red cob germplasm with CML149, CA339, CML154, Chang 631/o2, Zhongxi096/o2, CML166 and CML164.
Observation Group 2 was Sipingtou germplasm with CML140, YML23, YML29 and CML194.
Observation Group 3 was Reid germplasm with Xin 9101/o2 and Qi 205.
Observation YML12 and YML102 were assigned to the Lancaster group.
Observation CML147, CML161 and CML171 could not be assigned to current groups.
Observation The marker based groupings broadly agreed with prior combining ability and pedigree results.

“polymorphism information content”

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