By interacting organism › Bacteria › Alicyclobacillaceae

Associationobservedoriginal resultmeasured

Claim · model-written summary

Soil Mn concentration increase increased the abundances of rhizosphere Tumebacillus avium and Devosia riboflavina.

Taxon: Phytolacca icosandraPhytolacca icosandrat0
Treatment: soil Mn concentration increasede6
Interactor: Tumebacillus aviumTumebacillus aviume6other
Second interactor: Devosia riboflavinaDevosia riboflavinae6other
Outcome: abundances of rhizosphere bacteriae6
Direction: increasede6
Qualifier: Flavobacterium fevensee6

Verbatim

t0
“Manganese accumulation characteristics and rhizosphere decontamination mechanisms of Phytolacca icosandra L.”
✓ located verbatim in the source · title, characters 0–108

e6
“The abundances of rhizosphere bacteria Ramlibacter sp. and Planctomycetaceae bacterium LX124 decreased when soil Mn concentration increased, while those of Tumebacillus avium, Devosia riboflavina, and Flavobacterium fevense increased”
✓ located verbatim in the source · abstract, characters 1352–1585

Title

Manganese accumulation characteristics and rhizosphere decontamination mechanisms of Phytolacca icosandra L.

Josy Karel Ngueuyim Nono; Aurele Gnetegha Ayemele; Herbert Gnetegha Fotsidie; et al. Ecotoxicology and Environmental Safety 2025. doi:10.1016/j.ecoenv.2025.118970

Other claims from this paper (11)

Associationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Tumebacillus and Bacillus showed a significant negative correlation with germination phenotype.

Taxon: Brassica napusBrassica napust0
Interactor: TumebacillusTumebacilluse1other
Second interactor: Bacilluse1other
Outcome: germination phenotypee1
Direction: negative correlatione1

Verbatim

e1
“Tumebacillus and Bacillus showed a significant negative correlation with germination phenotype”
✓ located verbatim in the source · abstract, characters 1168–1262

t0
“Brassica napus seedlings”
✓ located verbatim in the source · title, characters 88–112

Title

Accelerated aging caused diversity and specificity loss in the bacterial communities of Brassica napus seedlings

Nina Bziuk; Simon Görtz; Jennifer Zur; et al. Seed Science Research 2025. doi:10.1017/s0960258526100099

Other claims from this paper (9)

Intervention effect Accelerated aging resulted in abnormal germination of Brassica napus seeds.
Intervention effect Accelerated aging reduced total germination of Brassica napus seeds.
Intervention effect Accelerated aging reduced diversity and evenness of the seed bacterial community.
Intervention effect Accelerated aging contributed to a shift from Gram-negative to Gram-positive bacteria in the seed bacterial community.
Intervention effect Accelerated aging increased the enrichment of Firmicutes irrespective of genotype and field site.
Association Alpha diversity of the seed bacterial community correlated positively with a high total germination.
Observation Control seeds developed mainly into normal seedlings.
Observation Control seeds were characterized by diverse bacterial communities comprising typical core seed microbes.
Observation Most isolated seed bacteria showed plant-beneficial characteristics, with greater beneficial potential in aged seeds.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Tumebacillus was significantly correlated with fresh tuber yield.

Interactor: TumebacillusTumebacilluse0other
Outcome: fresh tuber yielde0

Not reportedTaxonDirection

Verbatim

e0
“Tumebacillus was the most notable, as it showed a significant correlation with fresh tuber yield.”
✓ located verbatim in the source · abstract, characters 2122–2219

Title

Influence of organic, synthetic and biofertilizers on the diversity of cassava rhizosphere microbiome in Northeastern Thailand

Suthasinee Somyong; Wuttichai Mhuantong; Phakamas Phetchawang; et al. PeerJ 2025. doi:10.7717/peerj.20085

Other claims from this paper (5)

Observation Rhizosphere bacterial abundance and richness peaked at five months and rose relative to two months.
Observation Alpha diversity declined by ten months at both sites.
Intervention effect At Nampong, chicken manure and its fertilizer combinations increased alpha diversity relative to no fertilizer.
Intervention effect At Seungsang, chicken manure alone or mixed with synthetic fertilizer had greater alpha diversity than three other treatments.
Observation Eight bacterial genera were identified as targets in T3 and T8.

Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

GmAMT2.1/2.2 genes induce soybean to recruit beneficial microorganisms such as Tumebacillus, Alicyclobacillus and Penicillium by altering metabolites.

Taxon: soybeanGlycine maxe0
Interactor: TumebacillusTumebacilluse0symbiont
Second interactor: AlicyclobacillusAlicyclobacilluse0symbiont
Gene: GmAMT2.1/2.2e0
Outcome: recruit beneficial microorganismse0
Qualifier: by altering metabolitese0

Verbatim

e0
“The results showed that GmAMT2.1/2.2 genes could induce soybean to recruit beneficial microorganisms, such as Tumebacillus , Alicyclobacillus , and Penicillium , by altering metabolites”
✓ located verbatim in the source · abstract, characters 458–643

Title

GmAMT2.1/2.2-dependent ammonium nitrogen and metabolites shape rhizosphere microbiome assembly to mitigate cadmium toxicity

Zhandong Cai; Taobing Yu; Weiyi Tan; et al. npj Biofilms and Microbiomes 2024. doi:10.1038/s41522-024-00532-6

Other claims from this paper (3)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Warming inhibited microbial genera associated with nutrient cycling.

Taxon: Neotrinia splendensNeotrinia splendenst0
Treatment: warminge0
Interactor: Tumebacillus spp.Tumebacilluse0
Outcome: microbial genera associated with nutrient cyclinge0
Direction: inhibitede0

Not reportedComparator

Verbatim

e0
“warming or N addition not only decreased soil microbial diversity, but also inhibited microbial genera associated with nutrient cycling, such as that of Tumebacillus spp., Bacillus spp., and Mortierella spp.”
✓ located verbatim in the source · abstract, characters 1009–1216

t0
“Neotrinia splendens”
✓ located verbatim in the source · title, characters 72–91

Title

Soil Microorganisms Mediated the Responses of the Plant–Soil Systems of Neotrinia splendens to Nitrogen Addition and Warming in a Desert Ecosystem

Zhuxin Mao; Ming Yue; Yuchao Wang; et al. Agronomy 2024. doi:10.3390/agronomy14010132

Other claims from this paper (14)

Intervention effect Low nitrogen increased biomass by 22.83%.
Intervention effect High nitrogen increased biomass by 54.23%.
Intervention effect Moderate warming decreased biomass by 39.07%.
Intervention effect Severe warming decreased biomass by 45.47%.
Intervention effect Nitrogen addition had no significant effect on plant–soil C:N:P stoichiometry.
Intervention effect Moderate warming decreased leaf nitrogen by 17.50%.
Intervention effect Severe warming decreased leaf nitrogen by 16.20%.
Intervention effect Moderate warming decreased leaf phosphorus by 10.61%.
Intervention effect Severe warming decreased leaf phosphorus by 45.29%.
Intervention effect Warming increased plant C:N, C:P and N:P ratios.
Intervention effect Warming reduced soil microbial diversity.
Intervention effect Nitrogen addition reduced soil microbial diversity.
Intervention effect Nitrogen addition inhibited microbial genera associated with nutrient cycling.
Mechanism Warming and nitrogen addition induced phosphorus limitation through soil microbial inhibition.

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Salt tolerant genotypes enriched microorganisms linked to tolerance.

Taxon: soybeansGlycine maxe0
Material: Salt-Te0
Interactor: AlicyclobacillusAlicyclobacilluse0symbiont
Outcome: salt tolerancee0
Direction: enhancee0
Qualifier: Tumebacillus , and Bacilluse0

Verbatim

e0
“Salt-T genotypes enriched several microorganisms that contributed to enhance salt tolerance in soybeans, such as Alicyclobacillus, Tumebacillus , and Bacillus.”
✓ located verbatim in the source · abstract, characters 1555–1714

Title

Effects of salt stress on soil enzyme activities and rhizosphere microbial structure in salt-tolerant and -sensitive soybean

Dongwei Han; Di Zhang; Dezhi Han; et al. Scientific Reports 2023. doi:10.1038/s41598-023-44266-5

Other claims from this paper (9)

Intervention effect Salt stress significantly decreased soil enzyme activity.
Intervention effect Salt stress changed rhizosphere microbial structure depending on genotype.
Observation Salt tolerant soybean enriched 46 ASVs under salt stress.
Intervention effect Salt stress simplified the microbial network in tolerant soybean.
Association Sodium was a leading driver of bacterial community structure.
Association Nitrate nitrogen was a leading driver of bacterial community structure.
Association Ammonium nitrogen was a leading driver of bacterial community structure.
Association Olsen P was a leading driver of bacterial community structure.
Mechanism The simplified tolerant-genotype network may be unstable and susceptible.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Pseudoalteromonadaceae and Alicyclobacillaceae were most abundant in the vegetative stage.

Organ / stage: VSe0
Interactor: Pseudoalteromonadaceae and AlicyclobacillaceaeAlicyclobacillaceae Pseudoalteromonadaceaee0symbiont
Outcome: most abundant familiese0

Not reportedTaxon

Verbatim

e0
“In the VS, the most abundant families were Pseudoalteromonadaceae and Alicyclobacillaceae”
✓ located verbatim in the source · abstract, characters 1140–1229

Title

Comparison of specific endophytic bacterial communities in different developmental stages of Passiflora incarnata using culture‐dependent and culture‐independent analysis

Marcela C. Goulart; Luis G. Cueva‐Yesquén; Kelly J. Hidalgo Martinez; et al. MicrobiologyOpen 2019. doi:10.1002/mbo3.896

Other claims from this paper (8)

Observation 204 cultivable bacterial strains were isolated.
Observation Reproductive stage isolates belonged mainly to three genera.
Observation Bacillus dominated cultivable isolates at the vegetative stage.
Observation Sequencing produced 133,399 sequences, of which 25,092 were classified into OTUs.
Observation The vegetative stage had 416 OTUs.
Observation The reproductive stage had 66 OTUs.
Observation Enterobacteriaceae and Bacillaceae were most abundant in the reproductive stage.
Mechanism Stage-specific abundance suggested plant modulation of endophytic communities.

Alicyclobacillaceae 7 claims

7 claims