By interacting organism › Bacteria › Acetivibrionaceae

Associationobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

C. thermocellum carbohydrate solubilization fell from about 80% to about 50% as rye matured.

Taxon: winter ryeSecale cerealee0
Interactor: C. thermocellumAcetivibrio thermocelluse0other
Outcome: Solubilization of total carbohydratee0
Direction: droppede0
Value: from approximately 80% to approximately 50%e0

Verbatim

e0
“Solubilization of total carbohydrate dropped significantly as winter rye matured for both C. thermocellum (from approximately 80% to approximately 50%)”
✓ located verbatim in the source · abstract, characters 1152–1303

Title

Winter rye as a bioenergy feedstock: impact of crop maturity on composition, biological solubilization and potential revenue

Xiongjun Shao; Kay DiMarco; Tom L Richard; et al. Biotechnology for Biofuels 2015. doi:10.1186/s13068-015-0225-z

Other claims from this paper (11)

Association Winter rye water-soluble fraction decreased with maturity.
Association Total carbohydrate content stayed near 65% across maturity.
Association Protein mass fraction decreased with maturity.
Association Harvest yield increased with maturity.
Association Total protein remained similar across harvest dates.
Association SSCF carbohydrate solubilization fell from about 60% to about 30% as rye matured.
Observation C. thermocellum solubilization exceeded SSCF by 33% at the earliest harvest.
Observation C. thermocellum solubilization exceeded SSCF by 50% at the latest harvest.
Observation Potential protein and bioethanol revenue was stable across harvest dates.
Observation Most projected revenue came from ethanol.
Association Recovering winter rye soluble protein in soybean rotation could raise protein production per hectare by 20 to 35%.

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

C. thermocellum solubilization exceeded SSCF by 33% at the earliest harvest.

Interactor: C. thermocellumAcetivibrio thermocelluse0other
Outcome: total solubilizatione0
Direction: highere0
Value: 33%e0
Comparator: SSCFe0

Not reportedTaxon

Verbatim

e0
“C. thermocellum achieved total solubilization 33% higher than that of SSCF for the earliest harvest date”
✓ located verbatim in the source · abstract, characters 1360–1464

Title

Winter rye as a bioenergy feedstock: impact of crop maturity on composition, biological solubilization and potential revenue

Xiongjun Shao; Kay DiMarco; Tom L Richard; et al. Biotechnology for Biofuels 2015. doi:10.1186/s13068-015-0225-z

Other claims from this paper (11)

Association Winter rye water-soluble fraction decreased with maturity.
Association Total carbohydrate content stayed near 65% across maturity.
Association Protein mass fraction decreased with maturity.
Association Harvest yield increased with maturity.
Association Total protein remained similar across harvest dates.
Association C. thermocellum carbohydrate solubilization fell from about 80% to about 50% as rye matured.
Association SSCF carbohydrate solubilization fell from about 60% to about 30% as rye matured.
Observation C. thermocellum solubilization exceeded SSCF by 50% at the latest harvest.
Observation Potential protein and bioethanol revenue was stable across harvest dates.
Observation Most projected revenue came from ethanol.
Association Recovering winter rye soluble protein in soybean rotation could raise protein production per hectare by 20 to 35%.

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

C. thermocellum solubilization exceeded SSCF by 50% at the latest harvest.

Taxon: Winter ryeSecale cerealet0
Interactor: C. thermocellumAcetivibrio thermocelluse0other
Outcome: total solubilizatione0
Direction: highere0
Value: 50%e0
Comparator: SSCFe0

Verbatim

e0
“C. thermocellum achieved total solubilization 33% higher than that of SSCF for the earliest harvest date and 50% higher for the latest harvest date”
✓ located verbatim in the source · abstract, characters 1360–1507

t0
“Winter rye”
✓ located verbatim in the source · title, characters 0–10

Title

Winter rye as a bioenergy feedstock: impact of crop maturity on composition, biological solubilization and potential revenue

Xiongjun Shao; Kay DiMarco; Tom L Richard; et al. Biotechnology for Biofuels 2015. doi:10.1186/s13068-015-0225-z

Other claims from this paper (11)

Association Winter rye water-soluble fraction decreased with maturity.
Association Total carbohydrate content stayed near 65% across maturity.
Association Protein mass fraction decreased with maturity.
Association Harvest yield increased with maturity.
Association Total protein remained similar across harvest dates.
Association C. thermocellum carbohydrate solubilization fell from about 80% to about 50% as rye matured.
Association SSCF carbohydrate solubilization fell from about 60% to about 30% as rye matured.
Observation C. thermocellum solubilization exceeded SSCF by 33% at the earliest harvest.
Observation Potential protein and bioethanol revenue was stable across harvest dates.
Observation Most projected revenue came from ethanol.
Association Recovering winter rye soluble protein in soybean rotation could raise protein production per hectare by 20 to 35%.

Observationobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Purified CaXEGIP1 inhibited the hydrolase activity of the Clostridium enzyme.

Taxon: pepper (Capsicum annuum)Capsicum annuume1
Interactor: Clostridium thermocellumAcetivibrio thermocelluse0other
Gene: CaXEGIP1e0
Outcome: hydrolytic activity of the glycoside hydrolase74 family xyloglucan-specific endo-β-1,4-glucanasee0
Direction: inhibitede0

Verbatim

e0
“purified CaXEGIP1 protein significantly inhibited the hydrolytic activity of the glycoside hydrolase74 family xyloglucan-specific endo-β-1,4-glucanase from Clostridium thermocellum”
✓ located verbatim in the source · abstract, characters 381–561

e1
“pepper (Capsicum annuum) plants”
✓ located verbatim in the source · abstract, characters 222–253

Title

The Pepper Extracellular Xyloglucan-Specific Endo-β-1,4-Glucanase Inhibitor Protein Gene,CaXEGIP1, Is Required for Plant Cell Death and Defense Responses

Hyong Woo Choi; Nak Hyun Kim; Yeon Kyeong Lee; et al. PLANT PHYSIOLOGY 2012. doi:10.1104/pp.112.203828

Other claims from this paper (11)

Association CaXEGIP1 was induced in pepper leaves infected with avirulent Xanthomonas campestris pv vesicatoria.
Observation CaXEGIP1 protein localized mainly to the apoplast of onion epidermal cells.
Intervention effect CaXEGIP1 overexpression triggered spontaneous cell death in pepper leaves.
Intervention effect CaXEGIP1 overexpression triggered spontaneous cell death in Nicotiana benthamiana leaves.
Intervention effect CaXEGIP1 silencing enhanced pepper susceptibility to virulent X. campestris pv vesicatoria.
Intervention effect CaXEGIP1 silencing enhanced pepper susceptibility to avirulent X. campestris pv vesicatoria.
Intervention effect CaXEGIP1 silencing compromised the pepper hypersensitive response and lowered defense gene expression.
Intervention effect CaXEGIP1 overexpression enhanced Arabidopsis resistance to Hyaloperonospora arabidopsidis.
Intervention effect CaXEGIP1 overexpression induced spontaneous cell death in Arabidopsis leaves.
Intervention effect CaXEGIP1 overexpression increased expression of defense-related proteins in Arabidopsis leaves.
Observation The overexpression response included cell wall thickening and darkening.

Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Only transgenic switchgrass inhibited C. thermocellum after hot-water pretreatment.

Taxon: switchgrassPanicum virgatume0
Material: transgenic switchgrasse0
Interactor: C. thermocellumAcetivibrio thermocelluse0other
Outcome: inhibited C. thermocellume0
Comparator: wild-typee0

Not reportedDirection

Verbatim

e0
“Fermentation of both wild-type and transgenic switchgrass after milder hot water pretreatment with no water washing showed that only the transgenic switchgrass inhibited C. thermocellum”
✓ located verbatim in the source · abstract, characters 382–567

Title

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog

Timothy J Tschaplinski; Robert F Standaert; Nancy L Engle; et al. Biotechnology for Biofuels 2012. doi:10.1186/1754-6834-5-71

Other claims from this paper (9)

Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Iso-sinapyl alcohol and iso-sinapic acid separately added to media did not inhibit C. thermocellum cultures.

Taxon: switchgrassPanicum virgatumt0
Interactor: C. thermocellumAcetivibrio thermocelluse0other
Outcome: not inhibitory to C. thermocellum culturese0

Not reportedDirection

Verbatim

e0
“iso-sinapyl alcohol and iso-sinapic acid, added separately to media, were not inhibitory to C. thermocellum cultures”
✓ located verbatim in the source · abstract, characters 2593–2709

t0
“switchgrass”
✓ located verbatim in the source · title, characters 64–75

Title

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog

Timothy J Tschaplinski; Robert F Standaert; Nancy L Engle; et al. Biotechnology for Biofuels 2012. doi:10.1186/1754-6834-5-71

Other claims from this paper (9)

Acetivibrionaceae 6 claims

6 claims