By interacting organism › Bacteria › Hyphomicrobiaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

Rhizobium, Acidovorax, Terrimonas, Hyphomicrobium and Bdellovibrio increased in relative abundance under irrigation.

Taxon: WheatTriticum aestivumt0
Treatment: irrigatione0
Interactor: Rhizobium, Acidovorax, Terrimonas, Hyphomicrobium, BdellovibrioHyphomicrobiumRhizobiumBdellovibrioAcidovoraxTerrimonase0other
Outcome: increased under irrigatione0
Direction: increasede0

Verbatim

t0
“Wheat-Associated Bacterial Communities Under Dryland and Irrigated Conditions”
✓ located verbatim in the source · title, characters 46–123

e0
“others ( Rhizobium, Acidovorax, Terrimonas, Hyphomicrobium, Bdellovibrio) increased under irrigation”
✓ located verbatim in the source · abstract, characters 1392–1492

Title

Eight Years in the Soil: Temporal Dynamics of Wheat-Associated Bacterial Communities Under Dryland and Irrigated Conditions

Mingming Yang; Daniel C. Schlatter; Melissa K. LeTourneau; et al. Phytobiomes Journal 2025. doi:10.1094/pbiomes-02-24-0028-r

Other claims from this paper (9)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Pedomicrobium was identified as an effector bacterium related to disease prevention and yield and quality increase.

Taxon: C. pilosulaCodonopsis pilosulae0
Interactor: PedomicrobiumPedomicrobiume0other
Outcome: disease prevention and yield and quality increasee0

Not reportedDirection

Verbatim

e0
“Microlunatus , Rubrobacter , Luteitalea , Nakamurella , and Pedomicrobium were identified as effector bacteria, which were related to disease prevention and yield and quality increase of C. pilosula .”
✓ located verbatim in the source · abstract, characters 1393–1593

Title

The structure and function of rhizosphere bacterial communities: impact of chemical vs. bio-organic fertilizers on root disease, quality, and yield of Codonopsis pilosula

Bin Huang; Yuxuan Chen; Yi Cao; et al. Frontiers in Microbiology 2024. doi:10.3389/fmicb.2024.1484727

Other claims from this paper (16)

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Hyphomicrobium hollandicum was unaffected by P fertilization.

Treatment: P fertilizatione0
Interactor: Hyphomicrobium hollandicumHyphomicrobium hollandicume0symbiont
Outcome: Hyphomicrobium hollandicume0
Direction: not affectede0

Not reportedTaxonComparator

Verbatim

e0
“The microbes that were not affected by P fertilization constitute unique species involved in P mineralization such as Arenimonas daejeonensis, Hyphomicrobium hollandicum, Paenibacillus oenotherae, and Microlunatus speluncae”
✓ located verbatim in the source · abstract, characters 1041–1264

t0
“Legumes”
✓ located verbatim in the source · title, characters 103–110

Title

Harnessing Phosphorous (P) Fertilizer-Insensitive Bacteria to Enhance Rhizosphere P Bioavailability in Legumes

Antisar Afkairin; Mary M. Dixon; Cassidy Buchanan; et al. Microorganisms 2024. doi:10.3390/microorganisms12020353

Other claims from this paper (10)

Intervention effect Some common bean varieties maintained similar biomass with and without phosphorus fertilizer.
Intervention effect Some cowpea varieties maintained similar biomass with and without phosphorus fertilizer.
Intervention effect Some pea varieties maintained similar biomass with and without phosphorus fertilizer.
Observation Unfertilized varieties had unique rhizosphere microbes with different phosphorus solubilization and mineralization levels.
Intervention effect P fertilization reduced abundance of some P solubilizing and mineralizing rhizosphere microbes.
Intervention effect Pseudomonas decreased in abundance with P fertilization.
Intervention effect Azospirillum decreased in abundance with P fertilization.
Intervention effect Arenimonas daejeonensis was unaffected by P fertilization.
Intervention effect Paenibacillus oenotherae was unaffected by P fertilization.
Intervention effect Microlunatus speluncae was unaffected by P fertilization.

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

These bacterial abundances correlated positively with biomass and sodium and cadmium accumulation in A. adsurgens.

Taxon: Astragalus adsurgensAstragalus adsurgenst0
Interactor: Paludibaculum , Pedomicrobium , and AquicellaPedomicrobiumAquicellaPaludibaculume0symbiont
Outcome: biomass, Na + , and Cd accumulationse0
Direction: positively correlatede0

Verbatim

e0
“Paludibaculum , Pedomicrobium , and Aquicella , which positively correlated with biomass, Na + , and Cd accumulations”
✓ located verbatim in the source · abstract, characters 1122–1239

t0
“Astragalus adsurgens”
✓ located verbatim in the source · title, characters 88–108

Title

Effects of Funneliformis mosseae on the growth and rhizosphere bacterial communities of Astragalus adsurgens and Stipa grandis under combined cadmium and salt stress

Bingbing Jia; Peiran Guo; Yuchen Wang; et al. Restoration Ecology 2024. doi:10.1111/rec.14348

Other claims from this paper (10)

Intervention effect F. mosseae improved growth of Astragalus adsurgens.
Intervention effect F. mosseae improved growth of Stipa grandis.
Intervention effect In A. adsurgens, F. mosseae decreased shoot sodium and cadmium concentrations.
Intervention effect In A. adsurgens, F. mosseae increased sodium, cadmium and nutrient accumulation.
Intervention effect In A. adsurgens, F. mosseae increased stability and disturbance resistance of the bacterial interaction network.
Intervention effect F. mosseae increased Paludibaculum, Pedomicrobium and Aquicella relative abundances in A. adsurgens.
Intervention effect In S. grandis, F. mosseae promoted sodium, cadmium and nutrient accumulation.
Intervention effect In S. grandis, F. mosseae increased network nodes, links and average degree.
Intervention effect F. mosseae increased four bacterial genera in S. grandis rhizosphere.
Association Those genera correlated positively with biomass and sodium and cadmium accumulation in S. grandis.

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Depletion of the plant-beneficial genus Hyphomicrobium is a cause of the lily consecutive replanting problem.

Taxon: Lanzhou lilyLilium davidii var. unicolore0
Treatment: depletione5
Interactor: HyphomicrobiumHyphomicrobiume5other
Outcome: lily's CRPe5

Verbatim

t0
“Bacterial communities as indicators of soil health under a continuous cropping system”
✓ located verbatim in the source · title, characters 0–85

e0
“Lanzhou lily ( Lilium davidii var. unicolor ) is the only type of sweet edible lily in China”
✓ located verbatim in the source · abstract, characters 439–531

e5
“Long‐term replanting accumulation of the harbored highly abundant pathogenic bacterial genus Streptomyces and the species Bacillus simplex and depletion of the plant‐beneficial bacteria genera Sphingomonas and Hyphomicrobium are the causes of the lily's CRP under a 0–9 year replanting system”
✓ located verbatim in the source · abstract, characters 1854–2146

Title

Bacterial communities as indicators of soil health under a continuous cropping system

Guiying Shi; Hongqiang Sun; Alejandro Calderón‐Urrea; et al. Land Degradation and Development 2021. doi:10.1002/ldr.3919

Other claims from this paper (10)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Rhodomicrobium, a microbial taxon adapted to canga, was lacking in the rehabilitating mineland.

Taxon: Mimosa acutistipula var. ferreaMimosa acutistipulae0
Interactor: RhodomicrobiumRhodomicrobiume5symbiont
Outcome: microbial taxa adapted to the cangae5
Setting: RMe5

Verbatim

e0
“Mimosa acutistipula var. ferrea (Fabaceae) is endemic to ferruginous tropical rocky outcrops in the eastern Amazon”
✓ located verbatim in the source · abstract, characters 0–114

e5
“the microbial taxa adapted to the canga (i.e., Rasamsonia, Scytalidium, Roseiarcus, and Rhodomicrobium) were lacking in the RM”
✓ located verbatim in the source · abstract, characters 1217–1343

Title

Non-Specific Interactions of Rhizospheric Microbial Communities Support the Establishment of Mimosa acutistipula var. ferrea in an Amazon Rehabilitating Mineland

Paulo Henrique de Oliveira Costa; Sidney Vasconcelos do Nascimento; Hector Herrera; et al. Processes 2021. doi:10.3390/pr9112079

Other claims from this paper (9)

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Five named bacterial genera were enriched in rusty-root soil.

Taxon: P. ginsengPanax ginsenge0
Interactor: RhodomicrobiumRhodomicrobiume0other
Outcome: bacterial generae0
Direction: enrichede0

Verbatim

e0
“Significantly enriched bacterial genera (including Rhodomicrobium , Knoellia , Nakamurella , Asticcacaulis , and Actinomadura ) were mainly detected in the soil of rusty root‐affected P. ginseng”
✓ located verbatim in the source · abstract, characters 992–1186

Title

Microbial Community Changes in the Rhizosphere Soil of Healthy and Rusty Panax ginseng and Discovery of Pivotal Fungal Genera Associated with Rusty Roots

Xuemin Wei; Xiaoyue Wang; Pei Cao; et al. BioMed Research International 2020. doi:10.1155/2020/8018525

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Hyphomicrobium abundance decreased in diseased plants.

Taxon: Atractylodes macrocephalaAtractylodes macrocephalat0
Interactor: HyphomicrobiumHyphomicrobiume0symbiont
Outcome: numbers of some beneficial bacteriae0
Direction: decreasede0

Verbatim

t0
“Atractylodes macrocephala”
✓ located verbatim in the source · title, characters 58–83

e0
“decreased numbers of some beneficial bacteria including Sphingobium and Hyphomicrobium while increased numbers of pathogens such as Asticcacaulis, Rhizomicrobium in diseased ones”
✓ located verbatim in the source · abstract, characters 712–890

Title

Changes of microbial community in the rhizosphere soil of Atractylodes macrocephala when encountering replant disease

X.F. Yuan; T.J. Song; J.S. Yang; et al. South African Journal of Botany 2019. doi:10.1016/j.sajb.2019.08.046

Other claims from this paper (11)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Several bacterial genera were shared constant community members.

Taxon: Dactylorhiza maculataDactylorhiza maculatat0
Interactor: HyphomicrobiumHyphomicrobiume0symbiont
Outcome: constant memberse0

Verbatim

e0
“Their constant members are gg. Hyphomicrobium, Methylococcus, Nitrobacter, Pseudomonas and Sphingomonas (Proteobacteria), Bacillus and Clostridium (Firmicutes), Rhodococcus and Streptomyces (Actinobacteria).”
✓ located verbatim in the source · abstract, characters 735–942

t0
“Dactylorhiza maculata”
✓ located verbatim in the source · title, characters 72–93

Title

The underground organ microbial complexes of moorland spotted orchid Dactylorhiza maculata (L.) Soó (Orchidaceae)

Nina V. Shekhovtsova; Oleg A. Marakaev; Kseniya A. Pervushina; et al. Advances in Bioscience and Biotechnology 2013. doi:10.4236/abb.2013.47a2005

Other claims from this paper (7)

Observation Bacterial genera and abundance declined from rhizosphere to old and young tubers.
Observation The three bacterial communities closely resembled one another in biodiversity.
Observation Actinobacteria dominated the orchid rhizosphere.
Observation Proteobacteria prevailed in inner orchid tissues.
Observation Eight named bacterial genera and iron reducers belonged to the rhizosphere community.
Observation Agrobacterium occurred only in young tuber endophytic microbiota.
Observation Bifidobacterium occurred only in young tuber endophytic microbiota.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacterial forms resembling Ancalomicrobium and Hyphomicrobium were observed on or near roots of Oryzopsis hymenoides

Taxon: Oryzopsis hymenoidesStipa hymenoidest0
Interactor: AncalomicrobiumAncalomicrobiume3other
Second interactor: HyphomicrobiumHyphomicrobiume3other
Outcome: observed on or near root surfacese3

Verbatim

t0
“Oryzopsis hymenoides”
✓ located verbatim in the source · title, characters 48–68

e3
“The fungus Olpidium and unusual bacterial forms resembling Ancalomicrobium and Hyphomicrobium were observed on or near root surfaces”
✓ located verbatim in the source · abstract, characters 540–672

Title

Scanning Electron Microscopy of Rhizosheaths of Oryzopsis hymenoides

L. H. Wullstein; S. A. Pratt American Journal of Botany 1981. doi:10.2307/2442778

Other claims from this paper (4)

Hyphomicrobiaceae 11 claims

11 claims