By interacting organism › Bacteria › Gordoniaceae

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Seed inoculation with endophytic bacteria had a positive effect on A. thaliana growth.

Taxon: A. thalianaArabidopsis thalianae1
Treatment: seed inoculatione1
Interactor: Gordonia aichiensisGordonia aichiensise1symbiont
Second interactor: Sphingomonas sp.Sphingomonase1symbiont
Outcome: plant growthe1
Direction: positive effecte1

Not reportedComparator

Verbatim

e1
“A positive effect on plant growth was observed in A. thaliana following seed inoculation with endophytic fungi (Xylaria sp., Didymella sp., and Exobasidium sp.) and bacteria (Gordonia aichiensis and Sphingomonas sp.)”
✓ located verbatim in the source · abstract, characters 523–739

Title

The Influence of Wild Grapevine Endophytes on the Growth of the Model Plant Arabidopsis thaliana (L.) Heynh

Olga A. Aleynova; Alexey A. Ananev; Nikolay N. Nityagovsky; et al. Life 2026. doi:10.3390/life16040566

Other claims from this paper (4)

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Gordonia aichiensis P6PL2 inoculation reduced Arabidopsis endophyte alpha diversity.

Taxon: ArabidopsisArabidopsise0
Treatment: Gordonia aichiensis P6PL2e0
Interactor: Gordonia aichiensis P6PL2Gordonia aichiensise0symbiont
Outcome: alpha diversity (Shannon index)e0
Direction: reducede0
Comparator: controlse0

Verbatim

e0
“Arabidopsis seed inoculation with Agrobacterium sp. R8SCh-B12, Curtobacterium sp. P7SA-B3, and Gordonia aichiensis P6PL2 significantly reduced alpha diversity (Shannon index) and altered beta diversity relative to controls”
✓ located verbatim in the source · abstract, characters 933–1155

Title

Ability of Different Bacteria from Grapevine to Colonize Arabidopsis thaliana Plants

Olga A. Aleynova; Alexey A. Ananev; Nikolay N. Nityagovsky; et al. Plants 2026. doi:10.3390/plants15081151

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Two strains of Gordonia alkanivorans colonizing the grape phyllosphere are able to degrade guaiacol.

Taxon: Vitis viniferaVitis viniferae0
Organ / stage: grape phyllospheree1
Interactor: Gordonia alkanivoransGordonia alkanivoranse2other
Outcome: degrade guaiacole1

Verbatim

e0
“wine grapes (Vitis vinifera)”
✓ located verbatim in the source · abstract, characters 135–163

e1
“we identify two strains of the same species that colonize the grape phyllosphere and are able to degrade guaiacol”
✓ located verbatim in the source · abstract, characters 607–720

e2
“We identify the suite of genes that enable guaiacol degradation in Gordonia alkanivorans via RNAseq of cells growing on guaiacol as a sole carbon source”
✓ located verbatim in the source · abstract, characters 782–934

Title

Bacteria isolated from the grape phyllosphere capable of degrading guaiacol, a main volatile phenol associated with smoke taint in wine

Claudia Castro; Jacquelyn Badillo; Melissa Tumen-Velasquez; et al. PLoS ONE 2025. doi:10.1371/journal.pone.0331854

Other claims from this paper (4)

Observationobservedoriginal resultmeasured

Claim · model-written summary

RNA-seq of Gordonia alkanivorans grown on guaiacol identifies a suite of genes that enable guaiacol degradation.

Taxon: Vitis viniferaVitis viniferae0
Interactor: Gordonia alkanivoransGordonia alkanivoranse2other
Outcome: suite of genes that enable guaiacol degradatione2

Verbatim

e0
“wine grapes (Vitis vinifera)”
✓ located verbatim in the source · abstract, characters 135–163

e2
“We identify the suite of genes that enable guaiacol degradation in Gordonia alkanivorans via RNAseq of cells growing on guaiacol as a sole carbon source”
✓ located verbatim in the source · abstract, characters 782–934

Title

Bacteria isolated from the grape phyllosphere capable of degrading guaiacol, a main volatile phenol associated with smoke taint in wine

Claudia Castro; Jacquelyn Badillo; Melissa Tumen-Velasquez; et al. PLoS ONE 2025. doi:10.1371/journal.pone.0331854

Other claims from this paper (4)

Mechanismobservedoriginal resultmeasured

Claim · model-written summary

GuaA is necessary for guaiacol catabolism by Gordonia alkanivorans, shown by knockout of guaA.

Taxon: Vitis viniferaVitis viniferae0
Interactor: Gordonia alkanivoransGordonia alkanivoranse2other
Gene: GuaAe3
Outcome: catabolize guaiacole3

Verbatim

e0
“wine grapes (Vitis vinifera)”
✓ located verbatim in the source · abstract, characters 135–163

e2
“We identify the suite of genes that enable guaiacol degradation in Gordonia alkanivorans via RNAseq of cells growing on guaiacol as a sole carbon source”
✓ located verbatim in the source · abstract, characters 782–934

e3
“cannot catabolize guaiacol in vitro, providing evidence that GuaA is necessary for this process”
✓ located verbatim in the source · abstract, characters 1055–1150

Title

Bacteria isolated from the grape phyllosphere capable of degrading guaiacol, a main volatile phenol associated with smoke taint in wine

Claudia Castro; Jacquelyn Badillo; Melissa Tumen-Velasquez; et al. PLoS ONE 2025. doi:10.1371/journal.pone.0331854

Other claims from this paper (4)

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The P6PL2 genome was 5,435,824 bp and contained 5279 open reading frames.

Taxon: Vitis amurensisVitis amurensist0
Interactor: G. aichiensis P6PL2Gordonia aichiensise0symbiont
Outcome: whole genome sizee0
Value: 5,435,824 bpe0
Qualifier: 5279 open reading framese0

Verbatim

e0
“The whole genome size of G. aichiensis P6PL2 was 5,435,824 bp with 5279 open reading frames.”
✓ located verbatim in the source · abstract, characters 471–563

t0
“Vitis amurensis”
✓ located verbatim in the source · title, characters 58–73

Title

Whole Genome of Gordonia aichiensis P6PL2 Associated with Vitis amurensis That Stimulates Plant Growth

Alexey A. Ananev; Olga A. Aleynova; Nikolay N. Nityagovsky; et al. Horticulturae 2025. doi:10.3390/horticulturae11070735

Other claims from this paper (5)

Observation P6PL2 carried genes for phytohormone production.
Observation P6PL2 carried genes associated with increased nutrient bioavailability.
Observation P6PL2 carried genes for synthesis of gamma-aminobutyric acid and spermidine.
Observation P6PL2 carried genes involved in reducing abiotic and biotic stress factors.
Intervention effect One application of P6PL2 promoted growth of seedlings and 30-day rice plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

P6PL2 carried genes for phytohormone production.

Taxon: Vitis amurensisVitis amurensist0
Interactor: G. aichiensis P6PL2Gordonia aichiensise0symbiont
Outcome: genes for the production of phytohormones (auxins and cytokinins)e0

Verbatim

e0
“G. aichiensis P6PL2 possessed genes for the production of phytohormones (auxins and cytokinins)”
✓ located verbatim in the source · abstract, characters 564–659

t0
“Vitis amurensis”
✓ located verbatim in the source · title, characters 58–73

Title

Whole Genome of Gordonia aichiensis P6PL2 Associated with Vitis amurensis That Stimulates Plant Growth

Alexey A. Ananev; Olga A. Aleynova; Nikolay N. Nityagovsky; et al. Horticulturae 2025. doi:10.3390/horticulturae11070735

Other claims from this paper (5)

Method / resource The P6PL2 genome was 5,435,824 bp and contained 5279 open reading frames.
Observation P6PL2 carried genes associated with increased nutrient bioavailability.
Observation P6PL2 carried genes for synthesis of gamma-aminobutyric acid and spermidine.
Observation P6PL2 carried genes involved in reducing abiotic and biotic stress factors.
Intervention effect One application of P6PL2 promoted growth of seedlings and 30-day rice plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

P6PL2 carried genes associated with increased nutrient bioavailability.

Taxon: Vitis amurensisVitis amurensist0
Interactor: Gordonia aichiensis P6PL2Gordonia aichiensist0symbiont
Outcome: increased bioavailability of nutrientse0
Direction: increasede0

Verbatim

e0
“an increased bioavailability of nutrients such as nitrogen, phosphorus, potassium, and sulfur”
✓ located verbatim in the source · abstract, characters 664–757

t0
“Gordonia aichiensis P6PL2 Associated with Vitis amurensis”
✓ located verbatim in the source · title, characters 16–73

Title

Whole Genome of Gordonia aichiensis P6PL2 Associated with Vitis amurensis That Stimulates Plant Growth

Alexey A. Ananev; Olga A. Aleynova; Nikolay N. Nityagovsky; et al. Horticulturae 2025. doi:10.3390/horticulturae11070735

Other claims from this paper (5)

Method / resource The P6PL2 genome was 5,435,824 bp and contained 5279 open reading frames.
Observation P6PL2 carried genes for phytohormone production.
Observation P6PL2 carried genes for synthesis of gamma-aminobutyric acid and spermidine.
Observation P6PL2 carried genes involved in reducing abiotic and biotic stress factors.
Intervention effect One application of P6PL2 promoted growth of seedlings and 30-day rice plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

P6PL2 carried genes for synthesis of gamma-aminobutyric acid and spermidine.

Taxon: Vitis amurensisVitis amurensist0
Interactor: Gordonia aichiensis P6PL2Gordonia aichiensist0symbiont
Outcome: genes involved in synthesizing growth stimulants, such as gamma-aminobutyric acid and spermidinee0

Verbatim

e0
“the presence of genes involved in synthesizing growth stimulants, such as gamma-aminobutyric acid and spermidine”
✓ located verbatim in the source · abstract, characters 772–884

t0
“Gordonia aichiensis P6PL2 Associated with Vitis amurensis”
✓ located verbatim in the source · title, characters 16–73

Title

Whole Genome of Gordonia aichiensis P6PL2 Associated with Vitis amurensis That Stimulates Plant Growth

Alexey A. Ananev; Olga A. Aleynova; Nikolay N. Nityagovsky; et al. Horticulturae 2025. doi:10.3390/horticulturae11070735

Other claims from this paper (5)

Method / resource The P6PL2 genome was 5,435,824 bp and contained 5279 open reading frames.
Observation P6PL2 carried genes for phytohormone production.
Observation P6PL2 carried genes associated with increased nutrient bioavailability.
Observation P6PL2 carried genes involved in reducing abiotic and biotic stress factors.
Intervention effect One application of P6PL2 promoted growth of seedlings and 30-day rice plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

P6PL2 carried genes involved in reducing abiotic and biotic stress factors.

Taxon: Vitis amurensisVitis amurensist0
Interactor: Gordonia aichiensis P6PL2Gordonia aichiensist0symbiont
Outcome: genes involved in reducing various abiotic and biotic stress factorse0

Verbatim

e0
“the presence of genes involved in reducing various abiotic and biotic stress factors”
✓ located verbatim in the source · abstract, characters 916–1000

t0
“Gordonia aichiensis P6PL2 Associated with Vitis amurensis”
✓ located verbatim in the source · title, characters 16–73

Title

Whole Genome of Gordonia aichiensis P6PL2 Associated with Vitis amurensis That Stimulates Plant Growth

Alexey A. Ananev; Olga A. Aleynova; Nikolay N. Nityagovsky; et al. Horticulturae 2025. doi:10.3390/horticulturae11070735

Other claims from this paper (5)

Method / resource The P6PL2 genome was 5,435,824 bp and contained 5279 open reading frames.
Observation P6PL2 carried genes for phytohormone production.
Observation P6PL2 carried genes associated with increased nutrient bioavailability.
Observation P6PL2 carried genes for synthesis of gamma-aminobutyric acid and spermidine.
Intervention effect One application of P6PL2 promoted growth of seedlings and 30-day rice plants.

Gordoniaceae 15 claims

15 claims