Claim · model-written summary
A non-synonymous SNP in LOC_Os11g37560 was detected as the candidate causal mutation and is predicted to generate a premature stop codon.
- Taxon
- rice
Oryza sativat0 - Gene
- LOC_Os11g37560e0
- Outcome
- candidate causal mutatione0
Not reportedMaterialCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentComparatorSettingDirectionValueQualifier
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“rice”
e0“A non-synonymous SNP in the LOC_Os11g37560 gene was detected as the candidate causal mutation and is predicted to generate a premature stop codon”
Title
Kyu-Chan Shim; HyunJung Kim; Mi-Ra Yoon; et al. G3 Genes Genomes Genetics 2026. doi:10.1093/g3journal/jkag108
Other claims from this paper (7)
- Observation The KDS-1830C mutant had an opaque endosperm with a central cavity, unlike the normal translucent endosperm of wild-type Kitaake.
- Observation Scanning electron microscopy showed polygonal starch granules in Kitaake and irregularly shaped, rounded granules in KDS-1830C.
- Observation Grain width, thickness and weight differed significantly between KDS-1830C and wild type.
- Observation Grain protein content differed significantly between KDS-1830C and wild type.
- Observation KDS-1830C had lower seed hardness.
- Observation QTL-seq identified a significant locus on chromosome 11 associated with the cavity phenotype.
- Mechanism Protein structure prediction suggests the nonsense mutation in KDS-1830C truncates a beta sheet, potentially impairing amylopectin binding and granule crystallization.