Method / resourcemodel-written summary

The two P. cinnamomi isolates from avocado orchards were assembled de novo to 140–141 Mb genomes

A claim from Genomic and transcriptomic analyses of Phytophthora cinnamomi reveal complex genome architecture, expansion of pathogenicity factors, and host-dependent gene expression profiles · 2024

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The two P. cinnamomi isolates from avocado orchards were assembled de novo to 140–141 Mb genomes

Taxon
avocadoPersea americanae1
Interactor
P. cinnamomiPhytophthora cinnamomie1pathogen
Outcome
Genome sizese2
Value
140–141 Mbe2

Not reportedMaterialGeneCompoundOrgan / stageSecond interactorSecond interactor roleTreatmentComparatorSettingDirectionQualifier

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Persea americana
Persea americana · TaxonB.navez · CC BY-SA 3.0 · Wikimedia Commons ↗
Phytophthora cinnamomi
Phytophthora cinnamomi · InteractorKarel Černý · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“The genome of two genetically and phenotypically distinct P. cinnamomi isolates collected from avocado orchards in California were sequenced using PacBio and Illumina sequencing”

✓ located verbatim in the source · abstract, characters 323–500
e2

“Genome sizes were estimated by flow cytometry and assembled de novo to 140–141 Mb genomes with 21,111–21,402 gene models”

✓ located verbatim in the source · abstract, characters 502–622

Title

Genomic and transcriptomic analyses of Phytophthora cinnamomi reveal complex genome architecture, expansion of pathogenicity factors, and host-dependent gene expression profiles

Aidan C. Shands; Guangyuan Xu; Rodger J. Belisle; et al. Frontiers in Microbiology 2024. doi:10.3389/fmicb.2024.1341803

Other claims from this paper (7)

Record rev-96e97e47b5859ed2f888c0ddfd14681dd9cbd4a53a7e6522a5ffbb00c3ac4477 · schema claims-v0.9 · position 1 in the model’s answer