Claim · model-written summary
A co-expression network identified six salt-associated modules with 5639 genes.
- Taxon
- Populus trichocarpa
Populus trichocarpae0 - Outcome
- salt-associated modulese2
- Value
- 5639e2
- Qualifier
- including 426 lncRNAse2
Not reportedMaterialGeneCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentComparatorSettingDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Using 27 RNA-seq data sets from Populus trichocarpa leaves, stems and roots, we identified 2988 high-confidence lncRNAs, including 1183 salt-induced differentially expressed lncRNAs”
e2“a co-expression network identified six striking salt-associated modules with a total of 5639 genes, including 426 lncRNAs”
Title
Role of lncRNAs in cis‐ and trans‐regulatory responses to salt in Populus trichocarpa
Xiaoxue Ye; Shuo Wang; Xijuan Zhao; et al. The Plant Journal 2022. doi:10.1111/tpj.15714
Other claims from this paper (9)
- Observation 2988 high-confidence lncRNAs were identified in Populus trichocarpa leaves, stems and roots.
- Observation 1183 lncRNAs were salt-induced and differentially expressed.
- Association 301 lncRNAs have potential for positively affecting neighbouring genes, predominantly in cis rather than by co-transcription.
- Mechanism lncRNAs might contribute to distant gene expression of the salt-associated modules in a trans-regulatory manner.
- Observation 30 lncRNAs have potential to simultaneously cis- and trans-regulate salt-responsive homologous genes.
- Intervention effect Transient transformation of Ptlinc-NAC72 upregulated PtNAC72.A/B expression.
- Mechanism Ptlinc-NAC72 probably regulates PtNAC72.A/B by recognizing tandem GAAAAA elements in the 5' untranslated region.
- Intervention effect Ptlinc-NAC72 was significantly induced under long-term salt stress.
- Intervention effect Overexpression of Ptlinc-NAC72 produced a hypersensitive phenotype under salt stress.