Paper · 2010 · The Plant Journal

A member of the highly conserved FWL (tomato FW2.2-like) gene family is essential for soybean nodule organogenesis

Marc Libault; Xue-Cheng Zhang; Manjula Govindarajulu; et al.

8
claims
15
verbatim quotes
100
citations
3
research areas
✓
Open access

Abstract

A soybean homolog of the tomato FW2.2 gene, here named GmFWL1 (Glycine max FW2.2-like 1), was found to respond strongly to inoculation with the nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum. In tomato, the FW2.2 gene is hypothesized to control 30% of the variance in fruit weight by negatively regulating cell division. In the present study, the induction of GmFWL1 expression in root hair cells and nodules in response to B. japonicum inoculation was documented using quantitative RT-PCR and transcriptional fusions to both beta-glucuronidase (GUS) and green fluorescent protein (GFP). RNAi-mediated silencing of GmFWL1 expression resulted in a significant reduction in nodule number, with a concomitant reduction in nuclear size and changes in chromatin structure. The reduction in nuclear size is probably due to a change in DNA heterochromatinization, as the ploidy level of wild-type and RNAi-silenced nodule cells was similar. GmFWL1 was localized to the plasma membrane. The data suggest that GmFWL1 probably acts indirectly, perhaps through a cellular cascade, to affect chromatin structure/nuclei architecture. As previously proposed in tomato, this function may be a result of effects on plant cell division.

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Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

GmFWL1 responded strongly to Bradyrhizobium japonicum inoculation.

Taxon
soybeanGlycine maxe0
Treatment
inoculation with the nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicume0
Interactor
Bradyrhizobium japonicumBradyrhizobium japonicume0symbiont
Gene
GmFWL1e0
Outcome
respond stronglye0
Direction
stronglye0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium japonicum
Bradyrhizobium japonicum · InteractorLouisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“A soybean homolog of the tomato FW2.2 gene, here named GmFWL1 (Glycine max FW2.2-like 1), was found to respond strongly to inoculation with the nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum.”

✓ located verbatim in the source · abstract, characters 0–205 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

B. japonicum inoculation induced GmFWL1 expression in root hairs and nodules.

Taxon
soybeanGlycine maxt0
Organ / stage
root hair cells and nodulese0
Treatment
B. japonicum inoculatione0
Interactor
B. japonicumBradyrhizobium japonicume0symbiont
Gene
GmFWL1e0
Outcome
GmFWL1 expressione0
Direction
inductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium japonicum
Bradyrhizobium japonicum · InteractorLouisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“the induction of GmFWL1 expression in root hair cells and nodules in response to B. japonicum inoculation was documented”

✓ located verbatim in the source · abstract, characters 357–477 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

GmFWL1 silencing significantly reduced nodule number.

Taxon
soybeanGlycine maxt0
Treatment
RNAi-mediated silencing of GmFWL1 expressione0
Gene
GmFWL1e0
Outcome
nodule numbere0
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“RNAi-mediated silencing of GmFWL1 expression resulted in a significant reduction in nodule number”

✓ located verbatim in the source · abstract, characters 602–699 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

GmFWL1 silencing reduced nuclear size.

Taxon
soybeanGlycine maxt0
Treatment
RNAi-mediated silencing of GmFWL1 expressione0
Gene
GmFWL1e0
Outcome
nuclear sizee0
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“RNAi-mediated silencing of GmFWL1 expression resulted in a significant reduction in nodule number, with a concomitant reduction in nuclear size”

✓ located verbatim in the source · abstract, characters 602–745 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

GmFWL1 silencing changed chromatin structure.

Taxon
soybeanGlycine maxt0
Treatment
RNAi-mediated silencing of GmFWL1 expressione0
Gene
GmFWL1e0
Outcome
chromatin structuree0
Direction
changese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“RNAi-mediated silencing of GmFWL1 expression resulted in a significant reduction in nodule number, with a concomitant reduction in nuclear size and changes in chromatin structure.”

✓ located verbatim in the source · abstract, characters 602–781 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Ploidy was similar between wild type and silenced nodule cells.

Taxon
soybeanGlycine maxt0
Organ / stage
nodule cellse0
Outcome
ploidy levele0
Direction
similare0
Comparator
wild-typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“the ploidy level of wild-type and RNAi-silenced nodule cells was similar.”

✓ located verbatim in the source · abstract, characters 874–947 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GmFWL1 localized to the plasma membrane.

Taxon
soybeanGlycine maxt0
Gene
GmFWL1e0
Outcome
localized to the plasma membranee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“GmFWL1 was localized to the plasma membrane.”

✓ located verbatim in the source · abstract, characters 948–992 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

GmFWL1 may indirectly affect chromatin and nuclear architecture through a cellular cascade.

Taxon
soybeanGlycine maxt0
Gene
GmFWL1e0
Outcome
chromatin structure/nuclei architecturee0
Qualifier
perhaps through a cellular cascadee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“GmFWL1 probably acts indirectly, perhaps through a cellular cascade, to affect chromatin structure/nuclei architecture.”

✓ located verbatim in the source · abstract, characters 1015–1134 · show in text ↑
t0

“soybean”

✓ located verbatim in the source · title, characters 86–93 · show in text ↑

Bradyrhizobium japonicum · molecular: expression · Glycine max (soybean)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

loss of function · growth · Glycine max (soybean)Positive and negative results

21 papers: 5 positive, 16 negative or no effect

15 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. positive
  3. positive

17 papers more in this group

See all 21 papers →

inoculation · molecular: expression · Glycine max (soybean)Positive and negative results

30 papers: 26 positive, 4 negative or no effect

25 papers in the same direction as this paper · 4 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

26 papers more in this group

See all 30 papers →

loss of function · symbiosis · Glycine max (soybean)Positive and negative results

31 papers: 5 positive, 26 negative or no effect

25 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. negative
  3. negative

27 papers more in this group

See all 31 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.