Paper · 2013 · PLoS ONE

Members of the XB3 Family from Diverse Plant Species Induce Programmed Cell Death in Nicotiana benthamiana

Xiaoen Huang; Xueying Liu; Xiuhua Chen; et al.

6
claims
7
verbatim quotes
17
citations
3
research areas
✓
Open access · cc-by

Abstract

Programmed cell death has been associated with plant immunity and senescence. The receptor kinase XA21 confers resistance to bacterial blight disease of rice (Oryza sativa) caused by Xanthomonas oryzae pv. oryzae (Xoo). Here we show that the XA21 binding protein 3 (XB3) is capable of inducing cell death when overexpressed in Nicotiana benthamiana. XB3 is a RING finger-containing E3 ubiquitin ligase that has been positively implicated in XA21-mediated resistance. Mutation abolishing the XB3 E3 activity also eliminates its ability to induce cell death. Phylogenetic analysis of XB3-related sequences suggests a family of proteins (XB3 family) with members from diverse plant species. We further demonstrate that members of the XB3 family from rice, Arabidopsis and citrus all trigger a similar cell death response in Nicotiana benthamiana, suggesting an evolutionarily conserved role for these proteins in regulating programmed cell death in the plant kingdom.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Overexpressed XB3 induces cell death in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
overexpressede0
Gene
XB3e0
Outcome
cell deathe0
Direction
inducinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“XA21 binding protein 3 (XB3) is capable of inducing cell death when overexpressed in Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 242–348 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

A mutation abolishing XB3 E3 activity also eliminates cell-death induction.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Treatment
Mutation abolishing the XB3 E3 activitye0
Gene
XB3e0
Outcome
ability to induce cell deathe0
Direction
eliminatese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Mutation abolishing the XB3 E3 activity also eliminates its ability to induce cell death.”

✓ located verbatim in the source · abstract, characters 467–556 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 85–106 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Phylogenetic analysis supports an XB3-related protein family across diverse plant species.

Taxon
plant speciese0
Gene
XB3 familye0
Outcome
family of proteinse0

Verbatim

e0

“Phylogenetic analysis of XB3-related sequences suggests a family of proteins (XB3 family) with members from diverse plant species.”

✓ located verbatim in the source · abstract, characters 557–687 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Rice XB3 family members trigger a similar cell death response in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
members of the XB3 family from ricee0
Gene
XB3 familye0
Outcome
cell death responsee0
Direction
triggere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“members of the XB3 family from rice, Arabidopsis and citrus all trigger a similar cell death response in Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 716–842 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Arabidopsis XB3 family members trigger a similar cell death response in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
members of the XB3 family from rice, Arabidopsis and citruse0
Gene
XB3 familye0
Outcome
cell death responsee0
Direction
triggere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“members of the XB3 family from rice, Arabidopsis and citrus all trigger a similar cell death response in Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 716–842 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Citrus XB3 family members trigger a similar cell death response in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
members of the XB3 family from rice, Arabidopsis and citruse0
Gene
XB3 familye0
Outcome
cell death responsee0
Direction
triggere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“members of the XB3 family from rice, Arabidopsis and citrus all trigger a similar cell death response in Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 716–842 · show in text ↑

Arabidopsis · cytology · Nicotiana benthamianaPositive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

loss of function · cytology · Nicotiana benthamianaPositive and negative results

33 papers: 9 positive, 24 negative or no effect

8 papers in the same direction as this paper · 24 in the opposite direction

  1. negative
  2. negative
  3. negative

29 papers more in this group

See all 33 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.