Paper · 2010 · PLoS ONE

Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins

Alex Boyko; Todd Blevins; Youli Yao; et al.

11
claims
22
verbatim quotes
413
citations
2
research areas
✓
Open access · cc-by

Abstract

Epigenetic states and certain environmental responses in mammals and seed plants can persist in the next sexual generation. These transgenerational effects have potential adaptative significance as well as medical and agronomic ramifications. Recent evidence suggests that some abiotic and biotic stress responses of plants are transgenerational. For example, viral infection of tobacco plants and exposure of Arabidopsis thaliana plants to UVC and flagellin can induce transgenerational increases in homologous recombination frequency (HRF). Here we show that exposure of Arabidopsis plants to stresses, including salt, UVC, cold, heat and flood, resulted in a higher HRF, increased global genome methylation, and higher tolerance to stress in the untreated progeny. This transgenerational effect did not, however, persist in successive generations. Treatment of the progeny of stressed plants with 5-azacytidine was shown to decrease global genomic methylation and enhance stress tolerance. Dicer-like (DCL) 2 and DCL3 encode Dicer activities important for small RNA-dependent gene silencing. Stress-induced HRF and DNA methylation were impaired in dcl2 and dcl3 deficiency mutants, while in dcl2 mutants, only stress-induced stress tolerance was impaired. Our results are consistent with the hypothesis that stress-induced transgenerational responses in Arabidopsis depend on altered DNA methylation and smRNA silencing pathways.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Parental stress increased homologous recombination frequency in untreated Arabidopsis progeny.

Taxon
ArabidopsisArabidopsise0
Treatment
salt, UVC, cold, heat and floode0
Outcome
HRFe0
Direction
highere0
Comparator
untreated progenye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“exposure of Arabidopsis plants to stresses, including salt, UVC, cold, heat and flood, resulted in a higher HRF, increased global genome methylation, and higher tolerance to stress in the untreated progeny.”

✓ located verbatim in the source · abstract, characters 561–767 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Parental stress increased global genome methylation in Arabidopsis progeny.

Taxon
ArabidopsisArabidopsise0
Treatment
salt, UVC, cold, heat and floode0
Outcome
global genome methylatione0
Direction
increasede0
Comparator
untreated progenye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“exposure of Arabidopsis plants to stresses, including salt, UVC, cold, heat and flood, resulted in a higher HRF, increased global genome methylation, and higher tolerance to stress in the untreated progeny.”

✓ located verbatim in the source · abstract, characters 561–767 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Parental stress increased stress tolerance of untreated Arabidopsis progeny.

Taxon
ArabidopsisArabidopsise0
Treatment
salt, UVC, cold, heat and floode0
Outcome
tolerance to stresse0
Direction
highere0
Comparator
untreated progenye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“exposure of Arabidopsis plants to stresses, including salt, UVC, cold, heat and flood, resulted in a higher HRF, increased global genome methylation, and higher tolerance to stress in the untreated progeny.”

✓ located verbatim in the source · abstract, characters 561–767 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The transgenerational stress effect did not persist across successive Arabidopsis generations.

Taxon
ArabidopsisArabidopsist0
Organ / stage
successive generationse0
Outcome
transgenerational effecte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“This transgenerational effect did not, however, persist in successive generations.”

✓ located verbatim in the source · abstract, characters 768–850 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

5-azacytidine treatment decreased genomic methylation in progeny of stressed Arabidopsis.

Taxon
ArabidopsisArabidopsist0
Treatment
5-azacytidinee0
Outcome
global genomic methylatione0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Treatment of the progeny of stressed plants with 5-azacytidine was shown to decrease global genomic methylation and enhance stress tolerance.”

✓ located verbatim in the source · abstract, characters 851–992 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

5-azacytidine treatment enhanced stress tolerance in progeny of stressed Arabidopsis.

Taxon
ArabidopsisArabidopsist0
Treatment
5-azacytidinee0
Outcome
stress tolerancee0
Direction
enhancee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Treatment of the progeny of stressed plants with 5-azacytidine was shown to decrease global genomic methylation and enhance stress tolerance.”

✓ located verbatim in the source · abstract, characters 851–992 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Stress-induced HRF was impaired in Arabidopsis dcl2 mutants.

Taxon
ArabidopsisArabidopsist0
Material
dcl2e0
Outcome
Stress-induced HRFe0
Direction
impairede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Stress-induced HRF and DNA methylation were impaired in dcl2 and dcl3 deficiency mutants”

✓ located verbatim in the source · abstract, characters 1095–1183 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Stress-induced DNA methylation was impaired in Arabidopsis dcl2 mutants.

Taxon
ArabidopsisArabidopsist0
Material
dcl2e0
Outcome
DNA methylatione0
Direction
impairede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Stress-induced HRF and DNA methylation were impaired in dcl2 and dcl3 deficiency mutants”

✓ located verbatim in the source · abstract, characters 1095–1183 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Stress-induced HRF was impaired in Arabidopsis dcl3 mutants.

Taxon
ArabidopsisArabidopsist0
Material
dcl3e0
Outcome
Stress-induced HRFe0
Direction
impairede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Stress-induced HRF and DNA methylation were impaired in dcl2 and dcl3 deficiency mutants”

✓ located verbatim in the source · abstract, characters 1095–1183 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Stress-induced DNA methylation was impaired in Arabidopsis dcl3 mutants.

Taxon
ArabidopsisArabidopsist0
Material
dcl3e0
Outcome
DNA methylatione0
Direction
impairede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Stress-induced HRF and DNA methylation were impaired in dcl2 and dcl3 deficiency mutants”

✓ located verbatim in the source · abstract, characters 1095–1183 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Stress-induced tolerance was impaired only in Arabidopsis dcl2 mutants.

Taxon
ArabidopsisArabidopsist0
Material
dcl2e0
Outcome
stress-induced stress tolerancee0
Direction
impairede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“while in dcl2 mutants, only stress-induced stress tolerance was impaired.”

✓ located verbatim in the source · abstract, characters 1185–1258 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 32–43 · show in text ↑

5-azacytidine · tolerance: abiotic · ArabidopsisResults agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

cold · disease · ArabidopsisResults differ

7 papers: 6 positive, 1 negative or no effect

5 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. no effect
  3. positive

3 papers more in this group

See all 7 papers →

flooding · disease · ArabidopsisPositive and negative results

6 papers: 4 positive, 2 negative or no effect

3 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. no effect
  3. no effect

2 papers more in this group

See all 6 papers →

heat · disease · ArabidopsisPositive and negative results

9 papers: 6 positive, 3 negative or no effect

5 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. negative
  3. negative

5 papers more in this group

See all 9 papers →

uv · disease · ArabidopsisPositive and negative results

10 papers: 8 positive, 2 negative or no effect

7 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. negative
  3. no effect

6 papers more in this group

See all 10 papers →

salinity · disease · ArabidopsisPositive and negative results

17 papers: 11 positive, 6 negative or no effect

10 papers in the same direction as this paper · 6 in the opposite direction

  1. negative
  2. positive
  3. negative

13 papers more in this group

See all 17 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.