Paper · 1998 · Molecular Plant-Microbe Interactions

Conservation of noIR in the Sinorhizobium and Rhizobium Genera of the Rhizobiaceae Family

Ernö Kiss; Peter Mergaert; Boglàrka Olàh; et al.

7
claims
11
verbatim quotes
39
citations
2
research areas
—
Not open access

Abstract

In Sinorhizobium meliloti the NolR repressor displays differential negative regulation of nodulation genes and is required for optimal nodulation. Here, we demonstrate that the NolR function is not unique to S. meliloti but is also present in other species of the Rhizobiaceae family. DNA hybridization indicates the presence of nolR homologous sequences in species belonging to the Rhizobium and Sinorhizobium genera while no hybridization signal was detected in species from the Mesorhizobium, Bradyrhizo-bium, Azorhizobium, and Agrobacterium genera. We isolated the nolR gene from the Rhizobium leguminosarum bv. viciae strain TOM and showed that the TOM nolR gene acts similarly to S. meliloti nolR by repressing the expression of both the nodABCIJ and the nodD genes, resulting in decreased Nod factor production. The presence of a functional nolR gene in R. leguminosarum is correlated with an increased rate and extent of nodulation of pea. The conserved primary structure, the location of the DNA-binding domain, and the similar size of NolR proteins, compared with a family of small bacterial regulatory proteins including HlyU, SmtB, and the ArsR-type regulators, revealed that NolR belongs to this family.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

NolR function occurs in other Rhizobiaceae species.

Taxon
RhizobiaceaeRhizobiaceaee0
Gene
NolRe0
Outcome
NolR functione0

Verbatim

e0

“the NolR function is not unique to S. meliloti but is also present in other species of the Rhizobiaceae family”

✓ located verbatim in the source · abstract, characters 173–283 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

nolR homologous sequences were detected in Rhizobium and Sinorhizobium.

Taxon
Rhizobium and SinorhizobiumRhizobiumSinorhizobiume0
Gene
nolRe0
Outcome
presence of nolR homologous sequencese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rhizobium
Rhizobium · Taxon · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗
Sinorhizobium
Sinorhizobium · Taxon · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“presence of nolR homologous sequences in species belonging to the Rhizobium and Sinorhizobium genera”

✓ located verbatim in the source · abstract, characters 317–417 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

No hybridization signal was found in the other listed genera.

Taxon
Mesorhizobium, Bradyrhizo-bium, Azorhizobium, and AgrobacteriumAzorhizobiumAgrobacteriumBradyrhizobiumMesorhizobiume0
Outcome
no hybridization signale0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Azorhizobium
Azorhizobium · TaxonTony Rebelo · CC BY-SA 4.0 · iNaturalist ↗
Agrobacterium
Agrobacterium · Taxon · picture from its Wikimedia Commons categoryDidierFy · CC BY-SA 4.0 · Wikimedia Commons ↗
Bradyrhizobium
Bradyrhizobium · Taxon · picture of the genus (one of its species)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗
Mesorhizobium
Mesorhizobium · Taxon · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“no hybridization signal was detected in species from the Mesorhizobium, Bradyrhizo-bium, Azorhizobium, and Agrobacterium genera”

✓ located verbatim in the source · abstract, characters 424–551 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

The TOM nolR gene represses nodABCIJ and nodD expression.

Taxon
Rhizobium leguminosarum bv. viciae strain TOMRhizobium leguminosarum bv. viciae TOMe1
Gene
TOM nolRe0
Outcome
expression of both the nodABCIJ and the nodD genese0

Verbatim

e0

“the TOM nolR gene acts similarly to S. meliloti nolR by repressing the expression of both the nodABCIJ and the nodD genes”

✓ located verbatim in the source · abstract, characters 650–771 · show in text ↑
e1

“Rhizobium leguminosarum bv. viciae strain TOM”

✓ located verbatim in the source · abstract, characters 588–633 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

nolR repression decreased Nod factor production.

Taxon
Rhizobium leguminosarum bv. viciae strain TOMRhizobium leguminosarum bv. viciae TOMe1
Gene
nolRe1
Outcome
Nod factor productione0
Direction
decreasede0

Verbatim

e0

“resulting in decreased Nod factor production”

✓ located verbatim in the source · abstract, characters 773–817 · show in text ↑
e1

“the Rhizobium leguminosarum bv. viciae strain TOM and showed that the TOM nolR gene acts similarly to S. meliloti nolR by repressing the expression of both the nodABCIJ and the nodD genes”

✓ located verbatim in the source · abstract, characters 584–771 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Functional nolR correlates with increased rate and extent of pea nodulation.

Interactor
R. leguminosarumRhizobium leguminosarume0symbionte1
Gene
nolRe0
Outcome
rate and extent of nodulatione0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lathyrus oleraceus
Lathyrus oleraceus · TaxonRenee Comet (photographer) AV Number: AV-9400-4164 · Public domain · Wikimedia Commons ↗
Rhizobium leguminosarum
Rhizobium leguminosarum · Interactor · picture from its Wikimedia Commons categoryQaswarah 21 · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The presence of a functional nolR gene in R. leguminosarum is correlated with an increased rate and extent of nodulation of pea”

✓ located verbatim in the source · abstract, characters 819–946 · show in text ↑
e1

“Rhizobium leguminosarum bv. viciae strain TOM”

✓ located verbatim in the source · abstract, characters 588–633 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NolR was placed in a family of small bacterial regulatory proteins.

Taxon
RhizobiumRhizobiumt0
Gene
NolRe0
Outcome
belongs to this familye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rhizobium
Rhizobium · Taxon · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“NolR belongs to this family”

✓ located verbatim in the source · abstract, characters 1188–1215 · show in text ↑
t0

“Rhizobium”

✓ located verbatim in the source · title, characters 46–55 · show in text ↑