Abstract

BACKGROUND AND AIMS: Rice (Oryza sativa) has the rare ability to germinate and elongate a coleoptile under oxygen-deficient conditions, which include both hypoxia and anoxia. It has previously been shown that ALCOHOL DEHYDROGENASE 1 (ADH1) is required for cell division and cell elongation in the coleoptile of submerged rice seedlings by means of studies using a rice ADH1-deficient mutant, reduced adh activity (rad). The aim of this study was to understand how low ADH1 in rice affects carbohydrate metabolism in the embryo and endosperm, and lactate and alanine synthesis in the embryo during germination and subsequent coleoptile growth in submerged seedlings. METHODS: Wild-type and rad mutant rice seeds were germinated and grown under complete submergence. At 1, 3, 5 and 7 d after imbibition, the embryo and endosperm were separated and several of their metabolites were measured and compared. KEY RESULTS: In the rad embryo, the rate of ethanol fermentation was halved, while lactate and alanine concentrations were 2·4- and 5·7- fold higher in the mutant than in the wild type. Glucose and fructose concentrations in the embryos increased with time in the wild type, but not in the rad mutant. The rad mutant endosperm had lower amounts of the α-amylases RAMY1A and RAMY3D, resulting in less starch degradation and lower glucose concentrations. CONCLUSIONS: These results suggest that ADH1 is essential for sugar metabolism via glycolysis to ethanol fermentation in both the embryo and endosperm. In the endosperm, energy is presumably needed for synthesis of the amylases and for sucrose synthesis in the endosperm, as well as for sugar transport to the embryo.

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Claims 8

Associationobservedoriginal resultmeasured

Claim · model-written summary

In the rad mutant embryo the rate of ethanol fermentation was halved.

Material
rade1
Organ / stage
embryoe1
Outcome
rate of ethanol fermentatione1
Direction
halvede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e1

“In the rad embryo, the rate of ethanol fermentation was halved, while lactate and alanine concentrations were 2·4- and 5·7- fold higher in the mutant than in the wild type”

✓ located verbatim in the source · abstract, characters 916–1087 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Lactate concentrations in the mutant embryo were higher than in the wild type, at 2.4-fold.

Material
mutante1
Organ / stage
embryoe1
Outcome
lactatee1
Direction
highere1
Value
2·4-e1
Comparator
wild typee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e1

“In the rad embryo, the rate of ethanol fermentation was halved, while lactate and alanine concentrations were 2·4- and 5·7- fold higher in the mutant than in the wild type”

✓ located verbatim in the source · abstract, characters 916–1087 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Alanine concentrations in the mutant embryo were higher than in the wild type, at 5.7-fold.

Material
mutante1
Organ / stage
embryoe1
Outcome
alaninee1
Direction
highere1
Value
5·7- folde1
Comparator
wild typee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e1

“In the rad embryo, the rate of ethanol fermentation was halved, while lactate and alanine concentrations were 2·4- and 5·7- fold higher in the mutant than in the wild type”

✓ located verbatim in the source · abstract, characters 916–1087 · show in text ↑
Associationobservedoriginal resultmixedmeasured

Claim · model-written summary

Glucose and fructose concentrations in the embryo increased with time in the wild type but not in the rad mutant.

Material
wild typee2
Organ / stage
embryose2
Outcome
Glucose and fructose concentrationse2
Direction
increasede2
Qualifier
but not in the rad mutante2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e2

“Glucose and fructose concentrations in the embryos increased with time in the wild type, but not in the rad mutant”

✓ located verbatim in the source · abstract, characters 1089–1203 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The rad mutant endosperm had lower amounts of the alpha-amylases RAMY1A and RAMY3D.

Material
rad mutante3
Organ / stage
endosperme3
Gene
RAMY1A and RAMY3De3
Outcome
amounts of the α-amylases RAMY1A and RAMY3De3
Direction
lowere3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e3

“The rad mutant endosperm had lower amounts of the α-amylases RAMY1A and RAMY3D, resulting in less starch degradation and lower glucose concentrations”

✓ located verbatim in the source · abstract, characters 1205–1354 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The rad mutant endosperm had less starch degradation.

Material
rad mutante3
Organ / stage
endosperme3
Outcome
starch degradatione3
Direction
lesse3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e3

“The rad mutant endosperm had lower amounts of the α-amylases RAMY1A and RAMY3D, resulting in less starch degradation and lower glucose concentrations”

✓ located verbatim in the source · abstract, characters 1205–1354 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The rad mutant endosperm had lower glucose concentrations.

Material
rad mutante3
Organ / stage
endosperme3
Outcome
glucose concentrationse3
Direction
lowere3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e3

“The rad mutant endosperm had lower amounts of the α-amylases RAMY1A and RAMY3D, resulting in less starch degradation and lower glucose concentrations”

✓ located verbatim in the source · abstract, characters 1205–1354 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

ADH1 is essential for sugar metabolism via glycolysis to ethanol fermentation in both embryo and endosperm.

Gene
ADH1e4
Outcome
sugar metabolisme4
Qualifier
via glycolysis to ethanol fermentatione4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water”

✓ located verbatim in the source · title, characters 0–180 · show in text ↑
e4

“These results suggest that ADH1 is essential for sugar metabolism via glycolysis to ethanol fermentation in both the embryo and endosperm”

✓ located verbatim in the source · abstract, characters 1369–1506 · show in text ↑