Paper · 2008 · Acta Horticulturae

A COMPARISON OF GARDENIA AUGUSTA CULTIVARS USING ISOZYMES AND RAPD MARKERS

R.A. Criley; M.S. Roh; M. Kikuchi; et al.

6
claims
8
verbatim quotes
4
citations
3
research areas
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Not open access

Abstract

Numerous cultivars of the florist gardenia [Gardenia augusta (L) Merrill. = G. jasminoides J. Ellis] exist but there is confusion over naming as a result of different sources that apply different names to their materials. Two studies were conducted with (some) of the same plant materials to determine whether clear distinctions could be made. Comparisons were also made to other Gardenia species available to us. The isozyme study compared polymorphisms in seven enzyme systems in buffered leaf extracts using starch gel electrophoresis. Total genomic DNA was extracted recently matured leaves using the DNeasy Mini Kit (QIAGEN, Inc., Valencia, CA, USA) extraction protocol. Nine random 10-mer RAPD primers (Operon Technologies, Alameda, CA, USA) were selected for analyses. Gels were digitally imaged and analyzed to compile a presence/absence matrix. For the isozyme study, phosphoglucomutase (PGM), phos-phoglucoisomerase (PGI), and uridine diphosphoglucopyrophosphorylase(UDPP) were the only successful enzyme systems to yield clear interpretations for a total of 5 loci, and dendrograms based on Jaccard’s or simple matching coefficients of similarity were very comparable. However, the three enzyme systems were not sufficient to uniquely fingerprint all of the G. augusta accessions. The RAPD analysis using the nine 10-mer primers showed well-defined (bootstrap values >80) groups: the G. augusta, with subgroupings and the G. brighamii and species. Both isozyme and RAPD analyses separated or matched cultivars of G. augusta as well as G. brighamii and other Gardenia species. Coupled with leaf and floral measurements and morphological descriptions, it is possible to distinguish among commercial florist gardenias in a decisive manner. INTRODUCTION The florist gardenia (Gardenia augusta = G. jasminoides; family Rubiaceae) is a woody shrub native to east Asia and widely cultivated as a garden ornamental in tropical regions and temperate greenhouses (Staples and Herbst, 2005). The fragrant flowers are used as decorations and in corsages by florists. Many named double-flowered cultivars are available in the nursery trade, but names have been lost as plants have been traded among nurseries and homeowners. Brief descriptions of many cultivars can be found in the literature (Watkins, 1950; Everett, 1981; Huxley, 1992; Ruppert and Bradshaw, 1993) or plant patents (e.g., PP 93, 1934; PP 364, 1940; PP 622, 1944; PP 654, 1945), but these often do not provide sufficient information to distinguish among similar-appearing cultivars. Additionally, gardenia is known to mutate and more than two dozen clones have arisen as bud sports (Watkins, 1950), although new cultivars have also been selected from hybrid seedling populations (Milbocker, 1994). Although morphological traits and isozyme marker analysis have been used to distinguish cultivars and/or hybrids, both systems have limitations, the first due to environmental effects and the latter to selection of markers. Both isozyme and randomly amplified polymorphic DNA (RAPD) markers have been useful in determining genetic relationships among closely related species. Isozyme electrophoresis is chosen for its relative simplicity and because it provides direct visualization of gene products (Brewer Proc. XXVII IHC-S5 Ornamentals, Now! Ed.-in-Chief: R.A. Criley Acta Hort. 766, ISHS 2008 462 and Sing, 1970) and potentially can provide a unique fingerprint for each genetically distinct clone (Lebot et al., 1991). RAPD analysis requires minimal preliminary work and is quick and robust (Demeke et al., 1992; Molnar et al., 2000) and has become widely used for routine cultivar identification and genetic diversity of many plants. RAPD analysis has been used for genetic diversity of wild gardenia populations in Korea (Huh

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Claims 6

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Three enzyme systems yielded interpretable polymorphisms totaling five loci.

Taxon
GARDENIA AUGUSTAGardenia jasminoidese0t0
Outcome
clear interpretationse0
Value
5 locie0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gardenia jasminoides
Gardenia jasminoides · TaxonAlpsdake · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“For the isozyme study, phosphoglucomutase (PGM), phos-phoglucoisomerase (PGI), and uridine diphosphoglucopyrophosphorylase(UDPP) were the only successful enzyme systems to yield clear interpretations for a total of 5 loci”

✓ located verbatim in the source · abstract, characters 854–1075 · show in text ↑
t0

“GARDENIA AUGUSTA”

✓ located verbatim in the source · title, characters 16–32 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Isozyme similarity dendrograms from two coefficients were comparable.

Taxon
GARDENIA AUGUSTAGardenia jasminoidese0t0
Outcome
dendrogramse0
Direction
very comparablee0
Comparator
Jaccard’s or simple matching coefficients of similaritye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gardenia jasminoides
Gardenia jasminoides · TaxonAlpsdake · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“dendrograms based on Jaccard’s or simple matching coefficients of similarity were very comparable.”

✓ located verbatim in the source · abstract, characters 1081–1179 · show in text ↑
t0

“GARDENIA AUGUSTA”

✓ located verbatim in the source · title, characters 16–32 · show in text ↑
Method / resourceobservedoriginal resultnegativemeasured

Claim · model-written summary

Three isozyme systems could not uniquely fingerprint all G. augusta accessions.

Taxon
G. augustaGardenia jasminoidese0
Outcome
uniquely fingerprint all of the G. augusta accessionse0
Comparator
the three enzyme systemse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gardenia jasminoides
Gardenia jasminoides · TaxonAlpsdake · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the three enzyme systems were not sufficient to uniquely fingerprint all of the G. augusta accessions.”

✓ located verbatim in the source · abstract, characters 1189–1291 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Nine RAPD primers resolved G. augusta groups and G. brighamii with bootstrap values above 80.

Taxon
G. augustaGardenia jasminoidese0
Material
G. brighamiie0
Outcome
well-definede0
Value
bootstrap values >80e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gardenia jasminoides
Gardenia jasminoides · TaxonAlpsdake · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The RAPD analysis using the nine 10-mer primers showed well-defined (bootstrap values >80) groups: the G. augusta, with subgroupings and the G. brighamii and species.”

✓ located verbatim in the source · abstract, characters 1292–1458 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Isozyme and RAPD analyses separated or matched Gardenia cultivars and species.

Taxon
G. augustaGardenia jasminoidese0
Outcome
separated or matched cultivarse0
Comparator
G. brighamii and other Gardenia speciese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gardenia jasminoides
Gardenia jasminoides · TaxonAlpsdake · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Both isozyme and RAPD analyses separated or matched cultivars of G. augusta as well as G. brighamii and other Gardenia species.”

✓ located verbatim in the source · abstract, characters 1459–1586 · show in text ↑
Method / resourceauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Markers combined with leaf and floral morphology enabled decisive discrimination of commercial florist gardenias.

Taxon
gardeniasGardeniae0
Outcome
distinguish among commercial florist gardeniase0
Comparator
leaf and floral measurements and morphological descriptionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gardenia
Gardenia · Taxon · picture of the genus (one of its species)Queerbubbles · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Coupled with leaf and floral measurements and morphological descriptions, it is possible to distinguish among commercial florist gardenias in a decisive manner.”

✓ located verbatim in the source · abstract, characters 1587–1747 · show in text ↑