Paper · 2016 · BMC Genetics

Marker assisted pyramiding of drought yield QTLs into a popular Malaysian rice cultivar, MR219

Noraziyah Abd Aziz Shamsudin; B. P. Mallikarjuna Swamy; Wickneswari Ratnam; et al.

13
claims
28
verbatim quotes
148
citations
5
research areas
✓
Open access

Abstract

BACKGROUND: Three drought yield QTLs, qDTY 2.2, qDTY 3.1, and qDTY 12.1 with consistent effect on grain yield under reproductive stage drought stress were pyramided through marker assisted breeding with the objective of improving the grain yield of the elite Malaysian rice cultivar MR219 under reproductive stage drought stress. Foreground selection using QTL specific markers, recombinant selection using flanking markers, and background selection were performed. BC1F3-derived lines with different combinations of qDTY 2.2 , qDTY 3.1, and qDTY 12.1 were evaluated under both reproductive stage drought stress and non-stress during the dry seasons of 2013 and 2014 at IRRI. RESULTS: The grain yield reductions in the stress trials compared to non-stress trials ranged from 79 to 93%. In the stress trials, delay in days to flowering and reduction in plant height were observed. In both seasons, MR219 did not produce any yield under stress, however it produced a yield of 5917 kg ha(-1) during the 2013 dry season and 8319 kg ha(-1) during the 2014 dry season under non-stress. Selected introgressed lines gave a yield advantage of 903 to 2500 kg ha(-1) over MR219 under reproductive stage drought stress and a yield of more than 6900 kg ha(-1) under non-stress during the 2014 dry season. Among lines with single qDTY, lines carrying qDTY 2.2 provided a higher yield advantage under reproductive stage drought stress in the MR219 background. Two-qDTY combinations (qDTY 3.1+ qDTY 2.2 and qDTY 3.1+ qDTY 12.1) performed better than lines with three qDTY combinations, indicating the absence of positive interactions between the three qDTYs. CONCLUSION: We successfully developed drought-tolerant MR219 pyramided lines with a yield advantage of more than 1500 kg ha(-1). Differential yield advantages of different combinations of the qDTYs indicate a differential synergistic relationship among qDTYs. This is the first report on the successful effect of qDTYs in increasing the yield under drought in genetic backgrounds other than those in which the qDTYs were earlier identified.

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Claims 13

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Grain yield under stress trials was reduced by 79 to 93% relative to non-stress trials.

Treatment
stress trialse1
Outcome
grain yielde1
Direction
reductionse1
Value
79 to 93%e1
Comparator
non-stress trialse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e1

“The grain yield reductions in the stress trials compared to non-stress trials ranged from 79 to 93%”

✓ located verbatim in the source · abstract, characters 685–784 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Days to flowering were delayed under stress trials.

Treatment
stress trialse2
Outcome
days to floweringe2
Direction
delaye2
Comparator
non-stress trialse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e2

“In the stress trials, delay in days to flowering and reduction in plant height were observed”

✓ located verbatim in the source · abstract, characters 786–878 · show in text ↑
e1

“The grain yield reductions in the stress trials compared to non-stress trials ranged from 79 to 93%”

✓ located verbatim in the source · abstract, characters 685–784 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Plant height was reduced under stress trials.

Treatment
stress trialse2
Outcome
plant heighte2
Direction
reductione2
Comparator
non-stress trialse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e2

“In the stress trials, delay in days to flowering and reduction in plant height were observed”

✓ located verbatim in the source · abstract, characters 786–878 · show in text ↑
e1

“The grain yield reductions in the stress trials compared to non-stress trials ranged from 79 to 93%”

✓ located verbatim in the source · abstract, characters 685–784 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

MR219 produced no yield under stress.

Material
MR219e3
Outcome
yielde3
Qualifier
did not produce any yield under stresse3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e3

“In both seasons, MR219 did not produce any yield under stress, however it produced a yield of 5917 kg ha(-1) during the 2013 dry season and 8319 kg ha(-1) during the 2014 dry season under non-stress”

✓ located verbatim in the source · abstract, characters 880–1078 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

MR219 yielded 5917 kg/ha in the 2013 dry season under non-stress.

Material
MR219e3
Outcome
yielde3
Value
5917 kg ha(-1)e3
Qualifier
under non-stresse3
Setting
2013 dry seasone3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e3

“In both seasons, MR219 did not produce any yield under stress, however it produced a yield of 5917 kg ha(-1) during the 2013 dry season and 8319 kg ha(-1) during the 2014 dry season under non-stress”

✓ located verbatim in the source · abstract, characters 880–1078 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

MR219 yielded 8319 kg/ha in the 2014 dry season under non-stress.

Material
MR219e3
Outcome
yielde3
Value
8319 kg ha(-1)e3
Qualifier
under non-stresse3
Setting
2014 dry seasone3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e3

“In both seasons, MR219 did not produce any yield under stress, however it produced a yield of 5917 kg ha(-1) during the 2013 dry season and 8319 kg ha(-1) during the 2014 dry season under non-stress”

✓ located verbatim in the source · abstract, characters 880–1078 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Selected introgressed lines gave a yield advantage of 903 to 2500 kg/ha over MR219 under reproductive-stage drought stress.

Material
introgressed linese4
Treatment
reproductive stage drought stresse4
Outcome
yield advantagee4
Direction
higherinferrede4
Value
903 to 2500 kg ha(-1)e4
Comparator
MR219e4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e4

“Selected introgressed lines gave a yield advantage of 903 to 2500 kg ha(-1) over MR219 under reproductive stage drought stress and a yield of more than 6900 kg ha(-1) under non-stress during the 2014 dry season”

✓ located verbatim in the source · abstract, characters 1080–1290 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Selected introgressed lines yielded more than 6900 kg/ha under non-stress in the 2014 dry season.

Material
introgressed linese4
Outcome
yielde4
Value
more than 6900 kg ha(-1)e4
Qualifier
under non-stresse4
Setting
2014 dry seasone4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e4

“Selected introgressed lines gave a yield advantage of 903 to 2500 kg ha(-1) over MR219 under reproductive stage drought stress and a yield of more than 6900 kg ha(-1) under non-stress during the 2014 dry season”

✓ located verbatim in the source · abstract, characters 1080–1290 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Lines carrying qDTY 2.2 gave a higher yield advantage than other single-qDTY lines under reproductive-stage drought in the MR219 background.

Material
MR219e5
Treatment
reproductive stage drought stresse5
Gene
qDTY 2.2e5
Outcome
yield advantagee5
Direction
highere5
Comparator
lines with single qDTYe5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e5

“Among lines with single qDTY, lines carrying qDTY 2.2 provided a higher yield advantage under reproductive stage drought stress in the MR219 background”

✓ located verbatim in the source · abstract, characters 1292–1443 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Two-qDTY combinations performed better than lines with three qDTY combinations.

Treatment
Two-qDTY combinationse6
Gene
qDTY 3.1+ qDTY 2.2 and qDTY 3.1+ qDTY 12.1e6
Outcome
performede6
Direction
bettere6
Comparator
lines with three qDTY combinationse6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e6

“Two-qDTY combinations (qDTY 3.1+ qDTY 2.2 and qDTY 3.1+ qDTY 12.1) performed better than lines with three qDTY combinations, indicating the absence of positive interactions between the three qDTYs”

✓ located verbatim in the source · abstract, characters 1445–1641 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The three qDTYs show no positive interactions with one another.

Treatment
three qDTY combinationse6
Outcome
positive interactions between the three qDTYse6

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e6

“Two-qDTY combinations (qDTY 3.1+ qDTY 2.2 and qDTY 3.1+ qDTY 12.1) performed better than lines with three qDTY combinations, indicating the absence of positive interactions between the three qDTYs”

✓ located verbatim in the source · abstract, characters 1445–1641 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The qDTY combinations show a differential synergistic relationship among qDTYs.

Treatment
different combinations of the qDTYse7
Outcome
differential synergistic relationship among qDTYse7

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e7

“Differential yield advantages of different combinations of the qDTYs indicate a differential synergistic relationship among qDTYs”

✓ located verbatim in the source · abstract, characters 1772–1901 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

The authors developed drought-tolerant MR219 pyramided lines with a yield advantage of more than 1500 kg/ha.

Material
MR219 pyramided linese0
Outcome
yield advantagee0
Value
more than 1500 kg ha(-1)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Malaysian rice cultivar, MR219”

✓ located verbatim in the source · title, characters 64–94 · show in text ↑
e0

“We successfully developed drought-tolerant MR219 pyramided lines with a yield advantage of more than 1500 kg ha(-1)”

✓ located verbatim in the source · abstract, characters 1655–1770 · show in text ↑

drought · yield · Oryza sativa (rice)Positive and negative results

325 papers: 76 positive, 249 negative or no effect

75 papers in the same direction as this paper · 246 in the opposite direction · 3 reporting no difference from an alternative

  1. negative
  2. negative
  3. negative

321 papers more in this group

See all 325 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.