Paper · 2016 · Plant Biotechnology

Density effects on semi-dwarf and early flowering mutants of Arabidopsis thaliana under continuous light

Kei Takahashi; Miyuki Hara; Kana Miyata; et al.

15
claims
30
verbatim quotes
1
citations
3
research areas
✓
Open access

Abstract

Plant growth promotion and inhibition under low-and high-density conditions (referred to as the density effect) has been studied extensively. Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots. Additionally, petanko 1 (pta1) and pta5 were newly discovered alleles of the ROTUNDIFOLIA 3 (ROT3) and DWARF 4 (DWF4) genes that are involved in brassinosteroid biosynthesis. Unlike gai, the semi-dwarf mutants of pta1 and pta5 exhibited normal flowering times and a shortening of rosette leaves at high densities. Moreover, the pta1 and pta5 variants suppressed flowering stem shortening at high densities. pta5, but not pta1 suppressed the reduction in silique number at intermediate densities. SPINDLY (SPY) is a negative regulator of GA signaling, while PHYTOCHROME B (PHYB) is a red-light photoreceptor. High-density growth did not reduce the flowering time of phyB mutants, but did affect that of spy mutants. Neither spy nor phyB suppressed the shortening of rosette leaves at high densities; however, spy suppressed flowering stem shortening. Moreover, spy suppressed the reduction of silique number at high densities, while and phyB promoted the decrease. These data suggest that GA, BR, and light signaling pathways play important roles in the density effect.

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Claims 15

Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Density effects were unaffected by the position of wild-type and gai strains within pots.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
wild-type (WT) and gibberellic acid insensitive (gai) strainse0
Outcome
density effectse0
Qualifier
within potse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The pta1 and pta5 alleles are newly discovered alleles of the ROT3 and DWF4 genes involved in brassinosteroid biosynthesis.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
petanko 1 (pta1) and pta5e1
Gene
ROTUNDIFOLIA 3 (ROT3) and DWARF 4 (DWF4)e1
Outcome
newly discovered allelese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e1

“petanko 1 (pta1) and pta5 were newly discovered alleles of the ROTUNDIFOLIA 3 (ROT3) and DWARF 4 (DWF4) genes that are involved in brassinosteroid biosynthesis”

✓ located verbatim in the source · abstract, characters 344–503 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Semi-dwarf pta1 and pta5 mutants showed normal flowering times at high densities, unlike gai.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
semi-dwarf mutants of pta1 and pta5e2
Outcome
normal flowering timese2
Comparator
gaie2
Setting
at high densitiese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e2

“Unlike gai, the semi-dwarf mutants of pta1 and pta5 exhibited normal flowering times and a shortening of rosette leaves at high densities”

✓ located verbatim in the source · abstract, characters 505–642 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Semi-dwarf pta1 and pta5 mutants showed a shortening of rosette leaves at high densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
semi-dwarf mutants of pta1 and pta5e2
Outcome
shortening of rosette leavese2
Direction
shorteninge2
Setting
at high densitiese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e2

“Unlike gai, the semi-dwarf mutants of pta1 and pta5 exhibited normal flowering times and a shortening of rosette leaves at high densities”

✓ located verbatim in the source · abstract, characters 505–642 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

pta1 and pta5 suppressed flowering stem shortening at high densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
pta1 and pta5 variantse3
Outcome
flowering stem shorteninge3
Direction
suppressede3
Setting
at high densitiese3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e3

“the pta1 and pta5 variants suppressed flowering stem shortening at high densities”

✓ located verbatim in the source · abstract, characters 654–735 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

pta5 suppressed the reduction in silique number at intermediate densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
pta5e4
Outcome
reduction in silique numbere4
Direction
suppressede4
Qualifier
intermediate densitiese4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e4

“pta5, but not pta1 suppressed the reduction in silique number at intermediate densities”

✓ located verbatim in the source · abstract, characters 737–824 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

pta1 did not suppress the reduction in silique number at intermediate densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
pta1e4
Outcome
reduction in silique numbere4
Qualifier
intermediate densitiese4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e4

“pta5, but not pta1 suppressed the reduction in silique number at intermediate densities”

✓ located verbatim in the source · abstract, characters 737–824 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

The spy mutant did not suppress the shortening of rosette leaves at high densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
spye5
Outcome
shortening of rosette leavese5
Setting
at high densitiese5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e5

“Neither spy nor phyB suppressed the shortening of rosette leaves at high densities”

✓ located verbatim in the source · abstract, characters 1045–1127 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

The phyB mutant did not suppress the shortening of rosette leaves at high densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
phyBe5
Outcome
shortening of rosette leavese5
Setting
at high densitiese5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e5

“Neither spy nor phyB suppressed the shortening of rosette leaves at high densities”

✓ located verbatim in the source · abstract, characters 1045–1127 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The spy mutant suppressed flowering stem shortening.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
spye6
Outcome
flowering stem shorteninge6
Direction
suppressede6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e6

“however, spy suppressed flowering stem shortening”

✓ located verbatim in the source · abstract, characters 1129–1178 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

High-density growth did not reduce the flowering time of phyB mutants.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
phyB mutantse7
Outcome
flowering timee7
Setting
High-density growthe7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e7

“High-density growth did not reduce the flowering time of phyB mutants, but did affect that of spy mutants”

✓ located verbatim in the source · abstract, characters 938–1043 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

High-density growth affected the flowering time of spy mutants; the direction is not stated.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
spy mutantse7
Outcome
flowering timee7

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e7

“High-density growth did not reduce the flowering time of phyB mutants, but did affect that of spy mutants”

✓ located verbatim in the source · abstract, characters 938–1043 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The spy mutant suppressed the reduction in silique number at high densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
spye1
Outcome
silique numbere1
Direction
suppressede1
Setting
at high densitiese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e1

“spy suppressed the reduction of silique number at high densities”

✓ located verbatim in the source · abstract, characters 1190–1254 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

The phyB mutant promoted the decrease in silique number at high densities.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Material
phyBe2
Outcome
silique numbere1
Direction
promotede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e1

“spy suppressed the reduction of silique number at high densities”

✓ located verbatim in the source · abstract, characters 1190–1254 · show in text ↑
e2

“phyB promoted the decrease”

✓ located verbatim in the source · abstract, characters 1266–1292 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

GA, BR and light signaling pathways are suggested to play important roles in the density effect.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Outcome
density effecte1
Qualifier
GA, BR, and light signaling pathways play important rolese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Here, we show that such density effects were unaffected by the position of wild-type (WT) and gibberellic acid insensitive (gai) strains of Arabidopsis thaliana (Arabidopsis) within pots”

✓ located verbatim in the source · abstract, characters 142–328 · show in text ↑
e1

“These data suggest that GA, BR, and light signaling pathways play important roles in the density effect”

✓ located verbatim in the source · abstract, characters 1294–1397 · show in text ↑