Paper · 2018 · Frontiers in Plant Science

RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation

Sipla Aggarwal; Anil Kumar; Kaushal K. Bhati; et al.

9
claims
17
verbatim quotes
235
citations
3
research areas
✓
Open access · cc-by

Abstract

Enhancement of micronutrient bioavailability is crucial to address the malnutrition in the developing countries. Various approaches employed to address the micronutrient bioavailability are showing promising signs, especially in cereal crops. Phytic acid (PA) is considered as a major antinutrient due to its ability to chelate important micronutrients and thereby restricting their bioavailability. Therefore, manipulating PA biosynthesis pathway has largely been explored to overcome the negative impact in different crop species. Recently, we reported that functional wheat inositol pentakisphosphate kinase (TaIPK1) is involved in PA biosynthesis, however the functional roles of the IPK1 gene in wheat remains elusive. In this study, RNAi-mediated gene silencing was performed for IPK1 transcripts in hexaploid wheat. Four non-segregating RNAi lines of wheat were selected for detailed study (S3-D-6-1; S6-K-3-3; S6-K-6-10 and S16-D-9-5). Homozygous transgenic RNAi lines at T4 seeds with a decreased transcript of TaIPK1 showed 28%-56% reduction of the PA. Silencing of IPK1 also resulted in increased free phosphate in mature grains. Although, no phenotypic changes in the spike was observed but, lowering of grain PA resulted in the reduced number of seeds per spikelet. The lowering of grain PA was also accompanied by a significant increase in iron (Fe) and zinc (Zn) content, thereby enhancing their molar ratios (Zn:PA and Fe:PA). Overall, this work suggests that IPK1 is a promising candidate for employing genome editing tools to address the mineral accumulation in wheat grains.

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Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

TaIPK1 RNAi lines had 28%-56% less grain phytic acid.

Treatment
RNAie0
Gene
TaIPK1e0
Outcome
PAe0
Direction
reductione0
Value
28%-56%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Homozygous transgenic RNAi lines at T4 seeds with a decreased transcript of TaIPK1 showed 28%-56% reduction of the PA.”

✓ located verbatim in the source · abstract, characters 944–1062 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

IPK1 silencing increased free phosphate in mature grains.

Organ / stage
mature grainse0
Treatment
Silencing of IPK1e0
Gene
IPK1e0
Outcome
free phosphatee0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Silencing of IPK1 also resulted in increased free phosphate in mature grains.”

✓ located verbatim in the source · abstract, characters 1063–1140 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

IPK1 silencing did not visibly change spike phenotype.

Treatment
RNAi-Mediated Downregulationt0
Outcome
phenotypic changes in the spikee0
Direction
noe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“no phenotypic changes in the spike was observed”

✓ located verbatim in the source · abstract, characters 1151–1198 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Lower grain phytic acid was associated with fewer seeds per spikelet.

Compound
PAe0
Outcome
number of seeds per spikelete0
Direction
reducede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“lowering of grain PA resulted in the reduced number of seeds per spikelet”

✓ located verbatim in the source · abstract, characters 1204–1277 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Associationobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Lower grain phytic acid was accompanied by increased iron content.

Compound
PAe0
Outcome
iron (Fe)e0
Direction
increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The lowering of grain PA was also accompanied by a significant increase in iron (Fe) and zinc (Zn) content, thereby enhancing their molar ratios (Zn:PA and Fe:PA).”

✓ located verbatim in the source · abstract, characters 1279–1442 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Associationobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Lower grain phytic acid was accompanied by increased zinc content.

Compound
PAe0
Outcome
zinc (Zn) contente0
Direction
increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The lowering of grain PA was also accompanied by a significant increase in iron (Fe) and zinc (Zn) content, thereby enhancing their molar ratios (Zn:PA and Fe:PA).”

✓ located verbatim in the source · abstract, characters 1279–1442 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

The Zn:PA molar ratio increased as grain phytic acid fell.

Compound
PAe0
Outcome
Zn:PAe0
Direction
enhancinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The lowering of grain PA was also accompanied by a significant increase in iron (Fe) and zinc (Zn) content, thereby enhancing their molar ratios (Zn:PA and Fe:PA).”

✓ located verbatim in the source · abstract, characters 1279–1442 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

The Fe:PA molar ratio increased as grain phytic acid fell.

Compound
PAe0
Outcome
Fe:PAe0
Direction
enhancinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The lowering of grain PA was also accompanied by a significant increase in iron (Fe) and zinc (Zn) content, thereby enhancing their molar ratios (Zn:PA and Fe:PA).”

✓ located verbatim in the source · abstract, characters 1279–1442 · show in text ↑
t0

“RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation”

✓ located verbatim in the source · title, characters 0–154 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors propose IPK1 as a genome editing target for wheat grain mineral accumulation.

Gene
IPK1e0
Outcome
mineral accumulatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“IPK1 is a promising candidate for employing genome editing tools to address the mineral accumulation in wheat grains.”

✓ located verbatim in the source · abstract, characters 1476–1593 · show in text ↑

loss of function · molecular: metabolites · Triticum aestivum (wheat)Positive and negative results

32 papers: 14 positive, 18 negative or no effect

13 papers in the same direction as this paper · 18 in the opposite direction

  1. negative
  2. no effect
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loss of function · yield · Triticum aestivum (wheat)Positive and negative results

43 papers: 18 positive, 25 negative or no effect

24 papers in the same direction as this paper · 18 in the opposite direction

  1. positive
  2. positive
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.