Paper · 2019 · International Journal of Molecular Sciences

Key Maize Drought-Responsive Genes and Pathways Revealed by Comparative Transcriptome and Physiological Analyses of Contrasting Inbred Lines

Tinashe Zenda; Songtao Liu; Xuan Wang; et al.

12
claims
27
verbatim quotes
130
citations
3
research areas
✓
Open access · cc-by

Abstract

To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance, we conducted comprehensive comparative transcriptome and physiological analyses of drought-tolerant YE8112 and drought-sensitive MO17 inbred line seedlings that had been exposed to drought treatment for seven days. Resultantly, YE8112 seedlings maintained comparatively higher leaf relative water and proline contents, greatly increased peroxidase activity, but decreased malondialdehyde content, than MO17 seedlings. Using an RNA sequencing (RNA-seq)-based approach, we identified a total of 10,612 differentially expressed genes (DEGs). From these, we mined out four critical sets of drought responsive DEGs, including 80 specific to YE8112, 5140 shared between the two lines after drought treatment (SD_TD), five DEGs of YE8112 also regulated in SD_TD, and four overlapping DEGs between the two lines. Drought-stressed YE8112 DEGs were primarily associated with nitrogen metabolism and amino-acid biosynthesis pathways, whereas MO17 DEGs were enriched in the ribosome pathway. Additionally, our physiological analyses results were consistent with the predicted RNA-seq-based findings. Furthermore, quantitative real-time polymerase chain reaction (qRT-PCR) analysis and the RNA-seq results of twenty representative DEGs were highly correlated (R2 = 98.86%). Crucially, tolerant line YE8112 drought-responsive genes were predominantly implicated in stress signal transduction; cellular redox homeostasis maintenance; MYB, NAC, WRKY, and PLATZ transcriptional factor modulated; carbohydrate synthesis and cell-wall remodeling; amino acid biosynthesis; and protein ubiquitination processes. Our findings offer insights into the molecular networks mediating maize drought stress tolerance.

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Claims 12

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

YE8112 maintained higher leaf relative water and proline contents than MO17 under seven days of drought

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e2
Organ / stage
seedlingse2
Treatment
drought treatment for seven dayse0
Outcome
leaf relative water and proline contentse2
Direction
highere2
Comparator
MO17e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e2

“YE8112 seedlings maintained comparatively higher leaf relative water and proline contents, greatly increased peroxidase activity, but decreased malondialdehyde content, than MO17 seedlings”

✓ located verbatim in the source · abstract, characters 323–511 · show in text ↑
e0

“seedlings that had been exposed to drought treatment for seven days”

✓ located verbatim in the source · abstract, characters 241–308 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

YE8112 showed greatly increased peroxidase activity compared with MO17 under drought

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e2
Organ / stage
seedlingse2
Treatment
drought treatment for seven dayse0
Outcome
peroxidase activitye2
Direction
greatly increasede2
Comparator
MO17e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e2

“YE8112 seedlings maintained comparatively higher leaf relative water and proline contents, greatly increased peroxidase activity, but decreased malondialdehyde content, than MO17 seedlings”

✓ located verbatim in the source · abstract, characters 323–511 · show in text ↑
e0

“seedlings that had been exposed to drought treatment for seven days”

✓ located verbatim in the source · abstract, characters 241–308 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

YE8112 showed decreased malondialdehyde content compared with MO17 under drought

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e2
Organ / stage
seedlingse2
Treatment
drought treatment for seven dayse0
Outcome
malondialdehyde contente2
Direction
decreasede2
Comparator
MO17e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e2

“YE8112 seedlings maintained comparatively higher leaf relative water and proline contents, greatly increased peroxidase activity, but decreased malondialdehyde content, than MO17 seedlings”

✓ located verbatim in the source · abstract, characters 323–511 · show in text ↑
e0

“seedlings that had been exposed to drought treatment for seven days”

✓ located verbatim in the source · abstract, characters 241–308 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RNA-seq identified 10,612 differentially expressed genes in drought-treated maize seedlings

Taxon
maize (Zea mays L.)Zea mayse1
Outcome
differentially expressed genese3
Value
10,612e3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e3

“we identified a total of 10,612 differentially expressed genes (DEGs)”

✓ located verbatim in the source · abstract, characters 563–632 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Eighty drought-responsive DEGs were specific to YE8112

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e4
Outcome
drought responsive DEGse4
Value
80e4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e4

“we mined out four critical sets of drought responsive DEGs, including 80 specific to YE8112, 5140 shared between the two lines after drought treatment (SD_TD), five DEGs of YE8112 also regulated in SD_TD, and four overlapping DEGs between the two lines”

✓ located verbatim in the source · abstract, characters 646–898 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Five thousand one hundred forty drought-responsive DEGs were shared between YE8112 and MO17 after drought

Taxon
maize (Zea mays L.)Zea mayse1
Outcome
drought responsive DEGse4
Value
5140e4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e4

“we mined out four critical sets of drought responsive DEGs, including 80 specific to YE8112, 5140 shared between the two lines after drought treatment (SD_TD), five DEGs of YE8112 also regulated in SD_TD, and four overlapping DEGs between the two lines”

✓ located verbatim in the source · abstract, characters 646–898 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Five DEGs of YE8112 were also regulated in the shared drought set

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e4
Outcome
DEGs of YE8112 also regulated in SD_TDe4
Value
fivee4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e4

“we mined out four critical sets of drought responsive DEGs, including 80 specific to YE8112, 5140 shared between the two lines after drought treatment (SD_TD), five DEGs of YE8112 also regulated in SD_TD, and four overlapping DEGs between the two lines”

✓ located verbatim in the source · abstract, characters 646–898 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Four overlapping DEGs were found between the two inbred lines

Taxon
maize (Zea mays L.)Zea mayse1
Outcome
overlapping DEGse4
Value
foure4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e4

“we mined out four critical sets of drought responsive DEGs, including 80 specific to YE8112, 5140 shared between the two lines after drought treatment (SD_TD), five DEGs of YE8112 also regulated in SD_TD, and four overlapping DEGs between the two lines”

✓ located verbatim in the source · abstract, characters 646–898 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Drought-stressed YE8112 DEGs were primarily associated with nitrogen metabolism and amino-acid biosynthesis pathways

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e5
Treatment
Drought-stressede5
Outcome
nitrogen metabolism and amino-acid biosynthesis pathwayse5
Direction
primarily associated withe5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e5

“Drought-stressed YE8112 DEGs were primarily associated with nitrogen metabolism and amino-acid biosynthesis pathways, whereas MO17 DEGs were enriched in the ribosome pathway”

✓ located verbatim in the source · abstract, characters 900–1073 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

MO17 DEGs were enriched in the ribosome pathway under drought

Taxon
maize (Zea mays L.)Zea mayse1
Material
MO17e5
Outcome
ribosome pathwaye5
Direction
enrichede5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e5

“Drought-stressed YE8112 DEGs were primarily associated with nitrogen metabolism and amino-acid biosynthesis pathways, whereas MO17 DEGs were enriched in the ribosome pathway”

✓ located verbatim in the source · abstract, characters 900–1073 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

qRT-PCR and RNA-seq results for twenty representative DEGs were highly correlated

Taxon
maize (Zea mays L.)Zea mayse1
Outcome
the RNA-seq results of twenty representative DEGse6
Value
R2 = 98.86%e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e6

“quantitative real-time polymerase chain reaction (qRT-PCR) analysis and the RNA-seq results of twenty representative DEGs were highly correlated (R2 = 98.86%)”

✓ located verbatim in the source · abstract, characters 1196–1354 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Drought-responsive genes of tolerant line YE8112 were predominantly implicated in stress signal transduction

Taxon
maize (Zea mays L.)Zea mayse1
Material
YE8112e7
Outcome
drought-responsive genese7
Qualifier
predominantly implicated in stress signal transductione7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“To unravel the molecular mechanisms underpinning maize (Zea mays L.) drought stress tolerance”

✓ located verbatim in the source · abstract, characters 0–93 · show in text ↑
e7

“tolerant line YE8112 drought-responsive genes were predominantly implicated in stress signal transduction”

✓ located verbatim in the source · abstract, characters 1367–1472 · show in text ↑

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.