Paper · 2019 · Remote Sensing

A Proposed Methodology to Analyze Plant Growth and Movement from Phenomics Data

María Victoria Díaz-Galián; Fernando Perez-Sanz; Jose David Sanchez-Pagán; et al.

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claims
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verbatim quotes
6
citations
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research areas
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Open access · cc-by

Abstract

Image analysis of developmental processes in plants reveals both growth and organ movement. This study proposes a methodology to study growth and movement. It includes the standard acquisition of internal and external reference points and coordinates, coordinates transformation, curve fitting and the corresponding statistical analysis. Several species with different growth habits were used including Antirrhinum majus, A. linkianum, Petunia x hybrida and Fragaria x ananassa. Complex growth patterns, including gated growth, could be identified using a generalized additive model. Movement, and in some cases, growth, could not be adjusted to curves due to drastic changes in position. The area under the curve was useful in order to identify the initial stage of growth of an organ, and its growth rate. Organs displayed either continuous movements during the day with gated day/night periods of maxima, or sharp changes in position coinciding with day/night shifts. The movement was dependent on light in petunia and independent in F. ananassa. Petunia showed organ movement in both growing and fully-grown organs, while A. majus and F. ananassa showed both leaf and flower movement patterns linked to growth. The results indicate that different mathematical fits may help quantify growth rate, growth duration and gating. While organ movement may complicate image and data analysis, it may be a surrogate method to determine organ growth potential.

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Claims 10

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

A generalized additive model identified complex growth patterns including gated growth.

Taxon
plantsViridiplantaet0
Outcome
Complex growth patternse0
Value
gated growthe0

Not reportedComparator

Verbatim

e0

“Complex growth patterns, including gated growth, could be identified using a generalized additive model.”

✓ located verbatim in the source · abstract, characters 479–583 · show in text ↑
t0

“plants”

✓ located verbatim in the source · abstract, characters 45–51 · show in text ↑
Method / resourceobservedoriginal resultnegativemeasured

Claim · model-written summary

Abrupt position changes prevented fitting movement and sometimes growth to curves.

Taxon
plantsViridiplantaet0
Outcome
Movement, and in some cases, growthe0
Qualifier
drastic changes in positione0
Comparator
curvese0

Verbatim

e0

“Movement, and in some cases, growth, could not be adjusted to curves due to drastic changes in position.”

✓ located verbatim in the source · abstract, characters 584–688 · show in text ↑
t0

“plants”

✓ located verbatim in the source · abstract, characters 45–51 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Area under the curve identified the initial growth stage and organ growth rate.

Taxon
plantsViridiplantaet0
Outcome
initial stage of growth of an organ, and its growth ratee0
Value
area under the curvee0

Not reportedComparator

Verbatim

e0

“The area under the curve was useful in order to identify the initial stage of growth of an organ, and its growth rate.”

✓ located verbatim in the source · abstract, characters 689–807 · show in text ↑
t0

“plants”

✓ located verbatim in the source · abstract, characters 45–51 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Organs showed continuous daily movements with gated maxima or abrupt day night position changes.

Taxon
plantsViridiplantaet0
Outcome
continuous movements during the day with gated day/night periods of maxima, or sharp changes in positione0

Verbatim

e0

“Organs displayed either continuous movements during the day with gated day/night periods of maxima, or sharp changes in position coinciding with day/night shifts.”

✓ located verbatim in the source · abstract, characters 808–970 · show in text ↑
t0

“plants”

✓ located verbatim in the source · abstract, characters 45–51 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Petunia organ movement depended on light.

Taxon
petuniaPetuniae0
Treatment
lighte0
Outcome
movemente0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“The movement was dependent on light in petunia and independent in F. ananassa.”

✓ located verbatim in the source · abstract, characters 971–1049 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Fragaria organ movement did not depend on light.

Taxon
F. ananassaFragaria ×ananassae0
Treatment
lighte0
Outcome
movemente0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The movement was dependent on light in petunia and independent in F. ananassa.”

✓ located verbatim in the source · abstract, characters 971–1049 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Petunia had movement in growing and fully grown organs.

Taxon
PetuniaPetuniae0
Organ / stage
growing and fully-grown organse0
Outcome
organ movemente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia
Petunia · Taxon · picture from its Wikimedia Commons categorySalwa Farwaneh Dameh · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Petunia showed organ movement in both growing and fully-grown organs”

✓ located verbatim in the source · abstract, characters 1050–1118 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Antirrhinum majus had leaf and flower movement linked to growth.

Taxon
A. majusAntirrhinum majuse0
Outcome
leaf and flower movement patterns linked to growthe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Antirrhinum majus
Antirrhinum majus · TaxonUser:Haplochromis · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“A. majus and F. ananassa showed both leaf and flower movement patterns linked to growth.”

✓ located verbatim in the source · abstract, characters 1126–1214 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fragaria ananassa had leaf and flower movement linked to growth.

Taxon
F. ananassaFragaria ×ananassae0
Outcome
leaf and flower movement patterns linked to growthe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A. majus and F. ananassa showed both leaf and flower movement patterns linked to growth.”

✓ located verbatim in the source · abstract, characters 1126–1214 · show in text ↑
Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

Different mathematical fits may quantify growth rate, duration and gating.

Taxon
plantsViridiplantaet0
Outcome
growth rate, growth duration and gatinge0
Value
different mathematical fitse0

Not reportedComparator

Verbatim

e0

“different mathematical fits may help quantify growth rate, growth duration and gating.”

✓ located verbatim in the source · abstract, characters 1241–1327 · show in text ↑
t0

“plants”

✓ located verbatim in the source · abstract, characters 45–51 · show in text ↑