Paper · 2019 · Applied Environmental Biotechnology

PCR analysis of genes involved in base excision repair pathway in rice seedlings under Cr(III) exposure

Ying-Chun Huang; Na Wang; Bi-Yong Huang; et al.

6
claims
11
verbatim quotes
1
citations
2
research areas
✓
Open access · cc-by-nc

Abstract

The base excision repair (BER) pathway is an essential defense mechanism against oxidative damage of DNA in plants. Previous studies have reported that chromium (Cr) exposure causes oxidative stress and DNA damage due to accumulation of ROS. In this study, hydroponic experiments were carried out to investigate mRNA expression of 21 candidate genes involved in the BER pathway in rice seedlings exposed to Cr(III) using qRT-PCR. Changes of H2O2 and O2-• content in rice tissues and the relative growth rate (%) of rice seedlings were also determined. The results indicated that Cr(III) induced dose-dependent inhibition on the relative growth rate of rice seedlings. H2O2 content in roots were significantly increased. Changes of the content of H2O2 and O2-• in shoots was consistent. PCR analysis revealed that responses of selected 21 candidate genes to Cr(III) exposure were tissue specific. The BER pathway in roots was repressed by Cr(III) treatment but activated in shoots in response to Cr(III) exposure, suggesting that the BER pathway would play different roles in regulating and repairing DNA damage caused by Cr(III) exposure in rice.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Cr(III) dose-dependently inhibited rice seedling relative growth rate.

Treatment
Cr(III)e0
Outcome
relative growth ratee0
Direction
inhibitione0
Qualifier
dose-dependente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr(III) induced dose-dependent inhibition on the relative growth rate of rice seedlings.”

✓ located verbatim in the source · abstract, characters 579–667 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Root H2O2 content increased significantly under Cr(III) exposure.

Organ / stage
rootse0
Treatment
Cr(III)e1
Outcome
H2O2 contente0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“H2O2 content in roots were significantly increased.”

✓ located verbatim in the source · abstract, characters 668–719 · show in text ↑
e1

“rice seedlings exposed to Cr(III)”

✓ located verbatim in the source · abstract, characters 381–414 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Shoot H2O2 and O2-• content changed consistently.

Organ / stage
shootse0
Treatment
Cr(III)e1
Outcome
content of H2O2 and O2-•e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Changes of the content of H2O2 and O2-• in shoots was consistent.”

✓ located verbatim in the source · abstract, characters 720–785 · show in text ↑
e1

“rice seedlings exposed to Cr(III)”

✓ located verbatim in the source · abstract, characters 381–414 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 21 candidate genes showed tissue-specific responses to Cr(III).

Treatment
Cr(III) exposuree0
Gene
21 candidate genese0
Outcome
responses of selected 21 candidate genese0
Qualifier
tissue specifice0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“responses of selected 21 candidate genes to Cr(III) exposure were tissue specific.”

✓ located verbatim in the source · abstract, characters 813–895 · show in text ↑
e1

“rice seedlings exposed to Cr(III)”

✓ located verbatim in the source · abstract, characters 381–414 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Cr(III) repressed the BER pathway in roots.

Organ / stage
rootse0
Treatment
Cr(III) treatmente0
Outcome
BER pathwaye0
Direction
repressede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The BER pathway in roots was repressed by Cr(III) treatment”

✓ located verbatim in the source · abstract, characters 896–955 · show in text ↑
e1

“rice seedlings exposed to Cr(III)”

✓ located verbatim in the source · abstract, characters 381–414 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Cr(III) activated the BER pathway in shoots.

Organ / stage
shootse0
Treatment
Cr(III) exposuree0
Outcome
BER pathwaye1
Direction
activatede0

Not reportedTaxonComparator

Verbatim

e0

“activated in shoots in response to Cr(III) exposure”

✓ located verbatim in the source · abstract, characters 960–1011 · show in text ↑
e1

“The BER pathway in roots was repressed by Cr(III) treatment but activated in shoots in response to Cr(III) exposure,”

✓ located verbatim in the source · abstract, characters 896–1012 · show in text ↑

chromium atom · physiology: oxidative · Oryza sativa (rice)Positive and negative results

9 papers: 2 positive, 7 negative or no effect

6 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

5 papers more in this group

See all 9 papers →

chromium atom · growth · Oryza sativa (rice)Positive and negative results

11 papers: 2 positive, 9 negative or no effect

8 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. positive
  3. positive

7 papers more in this group

See all 11 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.