Paper · 2020 · Biotechnology and Applied Biochemistry

Gene expression studies of Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress

Lakshmi Kasirajan; Rabisha Valiyaparambth; Janani Velu; et al.

13
claims
27
verbatim quotes
10
citations
3
research areas
—
Not open access

Abstract

The study is aimed to assess the morphological, physiological, and molecular responses of seven Saccharum spontaneum clones for salinity stress. These clones (IND-07-1462, IND-07-1465, IND-07-1470, IND-07-1471, IND 16-1761, IND 16-1762, and IND 16-1763) were subjected to salinity stress at two different concentrations of electrical conductivity 6 and 8 ds/m after 60 days of planting. All seven genotypes showed a decrease in relative water content and nitrate reductase activity with an increase in severity of salt stress. The effect was more pronounced in IND-07-1471, while IND-16-1762 exhibited only a minimum drop. Similarly we observed an increase in proline content and lipid peroxidation activity for the genotype IND-07-1471, while IND-16-1762 showed minimum increase. Molecular profiling of genes/transcription factors like salt overly sensitive, responsive to abscissic acid, dirigent, myeloblastosis, ethylene responsive factor associated with salinity stress tolerance showed 19-, 18-, 17-, 10-, and 9-fold increased expression at 8 ds/m of salinity stress, respectively, in IND-16-1762 showed. Based on the evidences obtained from expression profiling, we have cloned the conserved regions of RAB and SOS1 genes. The domain of SOS and RAB was identified as a regulatory subunit of cAMP-dependent protein kinases which is involved in a signaling pathway.

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Claims 13

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

All seven clones showed reduced relative water content with stronger salt stress.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Treatment
salt stresse0
Outcome
relative water contente0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“All seven genotypes showed a decrease in relative water content and nitrate reductase activity with an increase in severity of salt stress”

✓ located verbatim in the source · abstract, characters 387–525 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

All seven clones showed reduced nitrate reductase activity with stronger salt stress.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Treatment
salt stresse0
Outcome
nitrate reductase activitye0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“All seven genotypes showed a decrease in relative water content and nitrate reductase activity with an increase in severity of salt stress”

✓ located verbatim in the source · abstract, characters 387–525 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

The decrease in water content and nitrate reductase activity was greatest in IND-07-1471.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-07-1471e0
Outcome
effecte0
Direction
more pronouncede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The effect was more pronounced in IND-07-1471, while IND-16-1762 exhibited only a minimum drop”

✓ located verbatim in the source · abstract, characters 527–621 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The decrease in water content and nitrate reductase activity was smallest in IND-16-1762.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Outcome
effecte0
Direction
minimum drope0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The effect was more pronounced in IND-07-1471, while IND-16-1762 exhibited only a minimum drop”

✓ located verbatim in the source · abstract, characters 527–621 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

IND-07-1471 showed increased proline content and lipid peroxidation activity.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-07-1471e0
Treatment
salinity stresst0
Outcome
proline content and lipid peroxidation activitye0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“we observed an increase in proline content and lipid peroxidation activity for the genotype IND-07-1471”

✓ located verbatim in the source · abstract, characters 633–736 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

IND-16-1762 showed the smallest increase in proline and lipid peroxidation.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Outcome
proline content and lipid peroxidation activitye1
Direction
minimum increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“IND-16-1762 showed minimum increase”

✓ located verbatim in the source · abstract, characters 744–779 · show in text ↑
e1

“increase in proline content and lipid peroxidation activity”

✓ located verbatim in the source · abstract, characters 648–707 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Salt overly sensitive gene expression increased 19-fold in IND-16-1762 at 8 ds/m.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Treatment
8 ds/m of salinity stresse0
Gene
salt overly sensitivee0
Outcome
expressione0
Direction
increasede0
Value
19-e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“salt overly sensitive, responsive to abscissic acid, dirigent, myeloblastosis, ethylene responsive factor associated with salinity stress tolerance showed 19-, 18-, 17-, 10-, and 9-fold increased expression at 8 ds/m of salinity stress, respectively, in IND-16-1762 showed”

✓ located verbatim in the source · abstract, characters 837–1109 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Responsive to abscissic acid gene expression increased 18-fold in IND-16-1762.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Treatment
8 ds/m of salinity stresse0
Gene
responsive to abscissic acide0
Outcome
expressione0
Direction
increasede0
Value
18-e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“salt overly sensitive, responsive to abscissic acid, dirigent, myeloblastosis, ethylene responsive factor associated with salinity stress tolerance showed 19-, 18-, 17-, 10-, and 9-fold increased expression at 8 ds/m of salinity stress, respectively, in IND-16-1762 showed”

✓ located verbatim in the source · abstract, characters 837–1109 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Dirigent gene expression increased 17-fold in IND-16-1762.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Treatment
8 ds/m of salinity stresse0
Gene
dirigente0
Outcome
expressione0
Direction
increasede0
Value
17-e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“salt overly sensitive, responsive to abscissic acid, dirigent, myeloblastosis, ethylene responsive factor associated with salinity stress tolerance showed 19-, 18-, 17-, 10-, and 9-fold increased expression at 8 ds/m of salinity stress, respectively, in IND-16-1762 showed”

✓ located verbatim in the source · abstract, characters 837–1109 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Myeloblastosis gene expression increased 10-fold in IND-16-1762.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Treatment
8 ds/m of salinity stresse0
Gene
myeloblastosise0
Outcome
expressione0
Direction
increasede0
Value
10-e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“salt overly sensitive, responsive to abscissic acid, dirigent, myeloblastosis, ethylene responsive factor associated with salinity stress tolerance showed 19-, 18-, 17-, 10-, and 9-fold increased expression at 8 ds/m of salinity stress, respectively, in IND-16-1762 showed”

✓ located verbatim in the source · abstract, characters 837–1109 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Ethylene responsive factor expression increased 9-fold in IND-16-1762.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Material
IND-16-1762e0
Treatment
8 ds/m of salinity stresse0
Gene
ethylene responsive factore0
Outcome
expressione0
Direction
increasede0
Value
9-folde0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“salt overly sensitive, responsive to abscissic acid, dirigent, myeloblastosis, ethylene responsive factor associated with salinity stress tolerance showed 19-, 18-, 17-, 10-, and 9-fold increased expression at 8 ds/m of salinity stress, respectively, in IND-16-1762 showed”

✓ located verbatim in the source · abstract, characters 837–1109 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Conserved regions of RAB and SOS1 were cloned.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Gene
RAB and SOS1 genese0
Outcome
conserved regionse0

Not reportedValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“we have cloned the conserved regions of RAB and SOS1 genes”

✓ located verbatim in the source · abstract, characters 1170–1228 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The SOS and RAB domain was identified as a regulatory subunit of cAMP-dependent protein kinases involved in signaling.

Taxon
Saccharum spontaneumSaccharum spontaneumt0
Gene
SOS and RABe0
Outcome
regulatory subunit of cAMP-dependent protein kinasese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Saccharum spontaneum
Saccharum spontaneum · TaxonScott Bauer · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The domain of SOS and RAB was identified as a regulatory subunit of cAMP-dependent protein kinases which is involved in a signaling pathway”

✓ located verbatim in the source · abstract, characters 1230–1369 · show in text ↑
t0

“Saccharum spontaneum, a wild relative of sugarcane in response to salinity stress”

✓ located verbatim in the source · title, characters 27–108 · show in text ↑