Paper · 2020 · Microorganisms

Sorghum Growth Promotion by Paraburkholderia tropica and Herbaspirillum frisingense: Putative Mechanisms Revealed by Genomics and Metagenomics

Eiko E. Kuramae; Stan Derksen; Thiago R. Schlemper; et al.

9
claims
18
verbatim quotes
53
citations
3
research areas
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Open access · cc-by

Abstract

Bacteria from the genera Paraburkholderia and Herbaspirillum can promote the growth of Sorghum bicolor, but the underlying mechanisms are not yet known. In a pot experiment, sorghum plants grown on sterilized substrate were inoculated with Paraburkholderia tropica strain IAC/BECa 135 and Herbaspirillum frisingense strain IAC/BECa 152 under phosphate-deficient conditions. These strains significantly increased Sorghum bicolor cultivar SRN-39 root and shoot biomass. Shotgun metagenomic analysis of the rhizosphere revealed successful colonization by both strains; however, the incidence of colonization was higher in plants inoculated with P. tropica strain IAC/BECa 135 than in those inoculated with H. frisingense strain IAC/BECa 152. Conversely, plants inoculated with H. frisingense strain IAC/BECa 152 showed the highest increase in biomass. Genomic analysis of the two inoculants implied a high degree of rhizosphere fitness of P. tropica strain IAC/BECa 135 through environmental signal processing, biofilm formation, and nutrient acquisition. Both genomes contained genes related to plant growth-promoting bacterial (PGPB) traits, including genes related to indole-3-acetate (IAA) synthesis, nitrogen fixation, nodulation, siderophore production, and phosphate solubilization, although the P. tropica strain IAC/BECa 135 genome contained a slightly more extensive repertoire. This study provides evidence that complementary mechanisms of growth promotion in Sorghum might occur, i.e., that P. tropica strain IAC/BECa 135 acts in the rhizosphere and increases the availability of nutrients, while H. frisingense strain IAC/BECa 152 influences plant hormone signaling. While the functional and taxonomic profiles of the rhizobiomes were similar in all treatments, significant differences in plant biomass were observed, indicating that the rhizobiome and the endophytic microbial community may play equally important roles in the complicated plant-microbial interplay underlying increased host plant growth.

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Claims 9

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Paraburkholderia tropica inoculation increased sorghum root and shoot biomass.

Taxon
Sorghum bicolorSorghum bicolore0
Material
cultivar SRN-39e0
Treatment
inoculated with Paraburkholderia tropica strain IAC/BECa 135e1
Interactor
Paraburkholderia tropica strain IAC/BECa 135Paraburkholderia tropicae1symbiont
Outcome
root and shoot biomasse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum bicolor
Sorghum bicolor · TaxonNo machine-readable author provided. Pethan assumed (based on copyright claims). · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“These strains significantly increased Sorghum bicolor cultivar SRN-39 root and shoot biomass.”

✓ located verbatim in the source · abstract, characters 374–467 · show in text ↑
e1

“inoculated with Paraburkholderia tropica strain IAC/BECa 135 and Herbaspirillum frisingense strain IAC/BECa 152 under phosphate-deficient conditions.”

✓ located verbatim in the source · abstract, characters 224–373 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Herbaspirillum frisingense inoculation increased sorghum root and shoot biomass.

Taxon
Sorghum bicolorSorghum bicolore0
Material
cultivar SRN-39e0
Treatment
Herbaspirillum frisingense strain IAC/BECa 152e1
Interactor
Herbaspirillum frisingense strain IAC/BECa 152Herbaspirillum frisingensee1symbiont
Outcome
root and shoot biomasse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum bicolor
Sorghum bicolor · TaxonNo machine-readable author provided. Pethan assumed (based on copyright claims). · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“These strains significantly increased Sorghum bicolor cultivar SRN-39 root and shoot biomass.”

✓ located verbatim in the source · abstract, characters 374–467 · show in text ↑
e1

“inoculated with Paraburkholderia tropica strain IAC/BECa 135 and Herbaspirillum frisingense strain IAC/BECa 152 under phosphate-deficient conditions.”

✓ located verbatim in the source · abstract, characters 224–373 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Both inoculant strains colonized the sorghum rhizosphere.

Taxon
SorghumSorghumt0
Outcome
successful colonization by both strainse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Shotgun metagenomic analysis of the rhizosphere revealed successful colonization by both strains; however, the incidence of colonization was higher in plants inoculated with P. tropica strain IAC/BECa 135 than in those inoculated with H. frisingense strain IAC/BECa 152.”

✓ located verbatim in the source · abstract, characters 468–738 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Rhizosphere colonization was higher after P. tropica than H. frisingense inoculation.

Taxon
SorghumSorghumt0
Treatment
inoculated with P. tropica strain IAC/BECa 135e0
Interactor
P. tropica strain IAC/BECa 135Paraburkholderia tropicae0symbiont
Outcome
incidence of colonizatione0
Direction
highere0
Comparator
H. frisingense strain IAC/BECa 152e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“the incidence of colonization was higher in plants inoculated with P. tropica strain IAC/BECa 135 than in those inoculated with H. frisingense strain IAC/BECa 152.”

✓ located verbatim in the source · abstract, characters 575–738 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

H. frisingense inoculation yielded the highest sorghum biomass increase.

Taxon
SorghumSorghumt0
Treatment
inoculated with H. frisingense strain IAC/BECa 152e0
Interactor
H. frisingense strain IAC/BECa 152Herbaspirillum frisingensee0symbiont
Outcome
biomasse0
Direction
highest increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“plants inoculated with H. frisingense strain IAC/BECa 152 showed the highest increase in biomass.”

✓ located verbatim in the source · abstract, characters 751–848 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

P. tropica genome analysis implied strong rhizosphere fitness via signaling, biofilms and nutrient acquisition.

Taxon
SorghumSorghumt0
Interactor
P. tropica strain IAC/BECa 135Paraburkholderia tropicae0symbiont
Outcome
rhizosphere fitness of P. tropica strain IAC/BECa 135e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Genomic analysis of the two inoculants implied a high degree of rhizosphere fitness of P. tropica strain IAC/BECa 135 through environmental signal processing, biofilm formation, and nutrient acquisition.”

✓ located verbatim in the source · abstract, characters 849–1052 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Both inoculant genomes carried plant growth promotion genes, with a slightly larger repertoire in P. tropica.

Taxon
SorghumSorghumt0
Outcome
genes related to plant growth-promoting bacterial (PGPB) traitse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Both genomes contained genes related to plant growth-promoting bacterial (PGPB) traits, including genes related to indole-3-acetate (IAA) synthesis, nitrogen fixation, nodulation, siderophore production, and phosphate solubilization, although the P. tropica strain IAC/BECa 135 genome contained a slightly more extensive repertoire.”

✓ located verbatim in the source · abstract, characters 1053–1385 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Rhizobiome functional and taxonomic profiles were similar across treatments despite significant biomass differences.

Taxon
SorghumSorghumt0
Outcome
functional and taxonomic profiles of the rhizobiomese0
Direction
similare0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“While the functional and taxonomic profiles of the rhizobiomes were similar in all treatments, significant differences in plant biomass were observed”

✓ located verbatim in the source · abstract, characters 1677–1826 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Plant biomass differed significantly among treatments.

Taxon
SorghumSorghumt0
Outcome
plant biomasse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“significant differences in plant biomass were observed”

✓ located verbatim in the source · abstract, characters 1772–1826 · show in text ↑
t0

“Sorghum”

✓ located verbatim in the source · title, characters 0–7 · show in text ↑

inoculation · growth · Sorghum bicolor (sorghum)Results agree

25 papers: 25 positive, 0 negative or no effect

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