Paper · 2020 · Plant Cell & Environment

UV‐B signalling in rice: Response identification, gene expression profiling and mutant isolation

Muhammad Idris; Nobu Seo; Lei Jiang; et al.

9
claims
11
verbatim quotes
16
citations
2
research areas
✓
Open access

Abstract

Abstract Responses of rice seedlings to UV‐B radiation (UV‐B) were investigated, aiming to establish rice as a model plant for UV‐B signalling studies. The growth of japonica rice coleoptiles, grown under red light, was inhibited by brief irradiation with UV‐B, but not with blue light. The effective UV‐B fluences (10 −1 ‐10 3 μmol m −2 ) were much lower than those reported in Arabidopsis. The response was much less in indica rice cultivars and its extent varied among Oryza species. We next identified UV‐B‐specific anthocyanin accumulation in the first leaf of purple rice and used this visible phenotype to isolate mutants. Some isolated mutants were further characterized, and one was found to have a defect in the growth response. Using microarrays, we identified a number of genes that are regulated by low‐fluence‐rate UV‐B in japonica coleoptiles. Some up‐regulated genes were analysed by real‐time PCR for UV‐B specificity and the difference between japonica and indica . More than 70% of UV‐B‐regulated rice genes had no homologs in UV‐B‐regulated Arabidopsis genes. Many UV‐B‐regulated rice genes are related to plant hormones and especially to jasmonate biosynthetic and responsive genes in apparent agreement with the growth response. Possible involvement of two rice homologs of UVR8, a UV‐B photoreceptor, is discussed.

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Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Brief UV-B irradiation inhibited growth of japonica rice coleoptiles, but blue light did not.

Organ / stage
coleoptilese1
Treatment
brief irradiation with UV‐Be1
Outcome
growthe1
Direction
inhibitede1
Qualifier
grown under red lighte1
Comparator
blue lighte1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Japonica Group
Oryza sativa Japonica Group · TaxonAugustus Binu : flickr : Instagram · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“The growth of japonica rice coleoptiles, grown under red light, was inhibited by brief irradiation with UV‐B, but not with blue light”

✓ located verbatim in the source · abstract, characters 152–285 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The effective UV-B fluences in rice were much lower than those reported for Arabidopsis.

Taxon
rice seedlingsOryza sativae0
Outcome
effective UV‐B fluencese2
Direction
much lowere2
Comparator
Arabidopsise2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Responses of rice seedlings to UV‐B radiation (UV‐B) were investigated”

✓ located verbatim in the source · abstract, characters 9–79 · show in text ↑
e2

“The effective UV‐B fluences (10 −1 ‐10 3 μmol m −2 ) were much lower than those reported in Arabidopsis”

✓ located verbatim in the source · abstract, characters 287–390 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The growth response to UV-B was much less in indica rice cultivars.

Material
indica rice cultivarse3
Outcome
responsee3
Direction
much lesse3

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e3

“The response was much less in indica rice cultivars and its extent varied among Oryza species”

✓ located verbatim in the source · abstract, characters 392–485 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The extent of the UV-B response varied among Oryza species.

Taxon
Oryza speciesOryzae3
Outcome
extente3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza
Oryza · Taxon · picture of the genus (one of its species)Dr. David Gealy, USDA ARS, Research Plant Physiologist · Public domain · Wikimedia Commons ↗

Verbatim

e3

“The response was much less in indica rice cultivars and its extent varied among Oryza species”

✓ located verbatim in the source · abstract, characters 392–485 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

UV-B induced anthocyanin accumulation in the first leaf of purple rice.

Taxon
purple ricee4
Organ / stage
first leafe4
Treatment
UV‐Be4
Outcome
anthocyanin accumulatione4

Verbatim

e4

“We next identified UV‐B‐specific anthocyanin accumulation in the first leaf of purple rice”

✓ located verbatim in the source · abstract, characters 487–577 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

One isolated rice mutant had a defect in the growth response to UV-B.

Taxon
rice seedlingsOryza sativae0
Material
mutantse5
Outcome
growth responsee5
Qualifier
defecte5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Responses of rice seedlings to UV‐B radiation (UV‐B) were investigated”

✓ located verbatim in the source · abstract, characters 9–79 · show in text ↑
e5

“Some isolated mutants were further characterized, and one was found to have a defect in the growth response”

✓ located verbatim in the source · abstract, characters 630–737 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Low-fluence-rate UV-B regulated a number of genes in japonica coleoptiles.

Taxon
japonicae6
Organ / stage
coleoptilese6
Treatment
low‐fluence‐rate UV‐Be6
Outcome
genes that are regulatede6

Verbatim

e6

“Using microarrays, we identified a number of genes that are regulated by low‐fluence‐rate UV‐B in japonica coleoptiles”

✓ located verbatim in the source · abstract, characters 739–857 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

More than 70% of UV-B-regulated rice genes had no homologs in UV-B-regulated Arabidopsis genes.

Outcome
UV‐B‐regulated rice genes had no homologse7
Value
More than 70%e7
Comparator
UV‐B‐regulated Arabidopsis genese7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e7

“More than 70% of UV‐B‐regulated rice genes had no homologs in UV‐B‐regulated Arabidopsis genes”

✓ located verbatim in the source · abstract, characters 984–1078 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Many UV-B-regulated rice genes are related to plant hormones, especially jasmonate biosynthetic and responsive genes, in apparent agreement with the growth response.

Compound
jasmonatee0
Outcome
UV‐B‐regulated rice genes are related to plant hormonese0
Qualifier
in apparent agreement with the growth responsee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Many UV‐B‐regulated rice genes are related to plant hormones and especially to jasmonate biosynthetic and responsive genes in apparent agreement with the growth response”

✓ located verbatim in the source · abstract, characters 1080–1249 · show in text ↑

uv · growth · Oryza sativa (rice)Results differ

27 papers: 6 positive, 21 negative or no effect

20 papers in the same direction as this paper · 6 in the opposite direction

  1. positive
  2. negative
  3. negative

23 papers more in this group

See all 27 papers →

radiation · growth · Oryza sativa (rice)Results differ

84 papers: 22 positive, 62 negative or no effect

61 papers in the same direction as this paper · 22 in the opposite direction

  1. negative
  2. negative
  3. positive

80 papers more in this group

See all 84 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.