Paper · 2021 · Journal of Applied Ecology

Nitrogen fixation and crop productivity enhancements co‐driven by intercrop root exudates and key rhizosphere bacteria

Heng‐Yu Hu; Hong Li; Min‐Min Hao; et al.

11
claims
16
verbatim quotes
114
citations
4
research areas
—
Not open access

Abstract

Abstract Crop diversity management is widely used to increase agricultural productivity and sustainability. Recent studies have demonstrated that maize root exudates can drive interspecific facilitation to enhance N 2 fixation of bean in intercropping systems. However, the mechanisms of N 2 fixation enhancement stimulated by root exudates in the intercropping systems remain unclear. Four experiments were designed to provide a progressively deeper understanding of how root exudates stimulate microbial‐mediated N 2 fixation. First, the effects of faba bean/maize intercropping on yields and soil microbial communities were determined in a field experiment. Second, root‐derived interspecific facilitation was evaluated using a root partitioning approach. Third, the key microbial taxa in the faba bean rhizosphere were traced using 13 C‐labelled maize root exudates. Fourth, the co‐driven mechanism of maize root exudates and micro‐organisms in the faba bean rhizosphere were explored. Faba bean/maize intercropping with maize residue return increased the yields of faba bean (26%), maize (27%) and broccoli (9.1%) compared to that under monocropping. Nodulin‐like 4 (NODL4), chalcone‐flavanone isomerase (CFI) and early nodulin‐like (ENODL2) gene expression in faba bean roots intercropped with maize increased by 1.5–2.3‐fold compared to that observed under monoculture. More than half of the N 2 fixation of faba bean increase under intercropping was due to interactions with micro‐organisms. Nine key bacterial genera in the faba bean rhizosphere were identified by 13 C‐DNA‐based stable isotope probing analysis. Among them Agromyces , Arthrobacter , Bacillus , Lysobacter and Paenibacillus directly fix N 2 , while Gemmatimonas , Heliobacillus , Natronocella and Sorangium increase the N 2 fixation capacity of Azotobacter by providing additional carbon sources. These key bacteria triggered by maize root exudates played an important role in the rhizosphere facilitation of intercropping. Synthesis and applications . We demonstrated a novel root–root facilitation of N 2 fixation and increased crop yields co‐driven by root exudates and rhizosphere bacteria under faba bean/maize intercropping, and nine key bacteria associated with this process were identified by 13 C‐DNA‐based stable isotope probing. We recommend the adoption and optimization of intercropping systems with residue return to reduce the shortcomings of continuous cropping and to increase the sustainability of crop production.

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Claims 11

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Faba bean/maize intercropping with maize residue return increased faba bean yield by 26% compared with monocropping.

Taxon
faba beanVicia fabae1
Treatment
Faba bean/maize intercropping with maize residue returne1
Outcome
yieldse1
Direction
increasede1
Value
26%e1
Comparator
monocroppinge1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“Faba bean/maize intercropping with maize residue return increased the yields of faba bean (26%), maize (27%) and broccoli (9.1%) compared to that under monocropping”

✓ located verbatim in the source · abstract, characters 990–1154 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Faba bean/maize intercropping with maize residue return increased maize yield by 27% compared with monocropping.

Taxon
maizeZea mayse1
Treatment
Faba bean/maize intercropping with maize residue returne1
Outcome
yieldse1
Direction
increasede1
Value
27%e1
Comparator
monocroppinge1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“Faba bean/maize intercropping with maize residue return increased the yields of faba bean (26%), maize (27%) and broccoli (9.1%) compared to that under monocropping”

✓ located verbatim in the source · abstract, characters 990–1154 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Faba bean/maize intercropping with maize residue return increased broccoli yield by 9.1% compared with monocropping.

Treatment
Faba bean/maize intercropping with maize residue returne1
Outcome
yieldse1
Direction
increasede1
Value
9.1%e1
Comparator
monocroppinge1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica oleracea var. italica
Brassica oleracea var. italica · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Faba bean/maize intercropping with maize residue return increased the yields of faba bean (26%), maize (27%) and broccoli (9.1%) compared to that under monocropping”

✓ located verbatim in the source · abstract, characters 990–1154 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Nodulation-related gene expression in faba bean roots intercropped with maize increased 1.5–2.3-fold compared with monoculture.

Taxon
faba beanVicia fabae2
Organ / stage
faba bean rootse2
Treatment
intercropped with maizee2
Gene
Nodulin-like 4 (NODL4), chalcone-flavanone isomerase (CFI) and early nodulin-like (ENODL2)e2
Outcome
gene expressione2
Direction
increasede2
Value
1.5–2.3e2
Comparator
monoculturee2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e2

“Nodulin-like 4 (NODL4), chalcone-flavanone isomerase (CFI) and early nodulin-like (ENODL2) gene expression in faba bean roots intercropped with maize increased by 1.5–2.3‐fold compared to that observed under monoculture”

✓ located after whitespace/quote normalisation · abstract, characters 1156–1375 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

More than half of the N2 fixation increase of faba bean under intercropping was due to interactions with micro-organisms.

Taxon
faba beanVicia fabae3
Interactor
micro-organismse3symbiont
Outcome
N 2 fixatione3
Qualifier
More than halfe3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e3

“More than half of the N 2 fixation of faba bean increase under intercropping was due to interactions with micro-organisms”

✓ located after whitespace/quote normalisation · abstract, characters 1377–1498 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nine key bacterial genera were identified in the faba bean rhizosphere by 13C-DNA stable isotope probing.

Taxon
faba beanVicia fabae4
Organ / stage
faba bean rhizospheree4
Outcome
Nine key bacterial generae4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e4

“Nine key bacterial genera in the faba bean rhizosphere were identified by 13 C‐DNA‐based stable isotope probing analysis”

✓ located verbatim in the source · abstract, characters 1500–1620 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Agromyces, Arthrobacter and Bacillus directly fix N2.

Taxon
faba beanVicia fabae4
Interactor
Agromyces , Arthrobacter , Bacilluse5symbiont
Outcome
directly fix N2e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e4

“Nine key bacterial genera in the faba bean rhizosphere were identified by 13 C‐DNA‐based stable isotope probing analysis”

✓ located verbatim in the source · abstract, characters 1500–1620 · show in text ↑
e5

“Agromyces , Arthrobacter , Bacillus , Lysobacter and Paenibacillus directly fix N 2 , while Gemmatimonas , Heliobacillus , Natronocella and Sorangium increase the N 2 fixation capacity of Azotobacter by providing additional carbon sources”

✓ located verbatim in the source · abstract, characters 1633–1871 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Lysobacter and Paenibacillus directly fix N2.

Taxon
faba beanVicia fabae4
Interactor
Lysobacter and PaenibacillusLysobacterPaenibacilluse5symbiont
Outcome
directly fix N2e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗
Lysobacter
Lysobacter · Interactor · picture of the genus (one of its species)Joekep · CC BY-SA 3.0 · Wikimedia Commons ↗
Paenibacillus
Paenibacillus · Interactor · picture of the genus (one of its species)Paenigenome at English Wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e4

“Nine key bacterial genera in the faba bean rhizosphere were identified by 13 C‐DNA‐based stable isotope probing analysis”

✓ located verbatim in the source · abstract, characters 1500–1620 · show in text ↑
e5

“Agromyces , Arthrobacter , Bacillus , Lysobacter and Paenibacillus directly fix N 2 , while Gemmatimonas , Heliobacillus , Natronocella and Sorangium increase the N 2 fixation capacity of Azotobacter by providing additional carbon sources”

✓ located verbatim in the source · abstract, characters 1633–1871 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

Gemmatimonas, Heliobacillus and Natronocella increase N2 fixation capacity of Azotobacter by providing additional carbon sources.

Taxon
faba beanVicia fabae4
Interactor
Gemmatimonas , Heliobacillus , NatronocellaHeliobacillusGemmatimonasNatronocellae5symbiont
Outcome
increase the N 2 fixation capacity of Azotobactere5
Qualifier
by providing additional carbon sourcese5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗
Gemmatimonas
Gemmatimonas · Interactor · picture of the genus (one of its species)Satoshi Hanada · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e4

“Nine key bacterial genera in the faba bean rhizosphere were identified by 13 C‐DNA‐based stable isotope probing analysis”

✓ located verbatim in the source · abstract, characters 1500–1620 · show in text ↑
e5

“Agromyces , Arthrobacter , Bacillus , Lysobacter and Paenibacillus directly fix N 2 , while Gemmatimonas , Heliobacillus , Natronocella and Sorangium increase the N 2 fixation capacity of Azotobacter by providing additional carbon sources”

✓ located verbatim in the source · abstract, characters 1633–1871 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

Sorangium increases N2 fixation capacity of Azotobacter by providing additional carbon sources.

Taxon
faba beanVicia fabae4
Interactor
SorangiumSorangiume5symbiont
Outcome
increase the N 2 fixation capacity of Azotobactere5
Qualifier
by providing additional carbon sourcese5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e4

“Nine key bacterial genera in the faba bean rhizosphere were identified by 13 C‐DNA‐based stable isotope probing analysis”

✓ located verbatim in the source · abstract, characters 1500–1620 · show in text ↑
e5

“Agromyces , Arthrobacter , Bacillus , Lysobacter and Paenibacillus directly fix N 2 , while Gemmatimonas , Heliobacillus , Natronocella and Sorangium increase the N 2 fixation capacity of Azotobacter by providing additional carbon sources”

✓ located verbatim in the source · abstract, characters 1633–1871 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors recommend adopting and optimizing faba bean/maize intercropping with residue return.

Taxon
faba bean/maizeVicia fabaZea mayse1
Outcome
adoption and optimization of intercropping systems with residue returne6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vicia faba
Vicia faba · TaxonRahmaziz · CC BY-SA 4.0 · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e1

“Faba bean/maize intercropping with maize residue return increased the yields of faba bean (26%), maize (27%) and broccoli (9.1%) compared to that under monocropping”

✓ located verbatim in the source · abstract, characters 990–1154 · show in text ↑
e6

“We recommend the adoption and optimization of intercropping systems with residue return to reduce the shortcomings of continuous cropping and to increase the sustainability of crop production”

✓ located verbatim in the source · abstract, characters 2316–2507 · show in text ↑

Zea mays · yield · Brassica oleracea (wild cabbage)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. no effect
See all 2 papers →

Vicia faba · yield · Zea mays (maize)Positive and negative results

25 papers: 24 positive, 1 negative or no effect

23 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

21 papers more in this group

See all 25 papers →

Vicia faba · yield · Brassica oleracea (wild cabbage)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Zea mays · molecular: expression · Vicia faba (faba bean)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Zea mays · yield · Vicia faba (faba bean)Results agree

6 papers: 6 positive, 0 negative or no effect

5 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

2 papers more in this group

See all 6 papers →

organic · yield · Vicia faba (faba bean)Positive and negative results

11 papers: 10 positive, 1 negative or no effect

9 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

7 papers more in this group

See all 11 papers →

organic · yield · Brassica oleracea (wild cabbage)Positive and negative results

24 papers: 20 positive, 4 negative or no effect

19 papers in the same direction as this paper · 3 in the opposite direction · 1 reporting no difference from an alternative

  1. no effect
  2. no effect
  3. negative

20 papers more in this group

See all 24 papers →

intercropping · yield · Brassica oleracea (wild cabbage)Positive and negative results

43 papers: 35 positive, 8 negative or no effect

34 papers in the same direction as this paper · 5 in the opposite direction · 3 reporting no difference from an alternative

  1. negative
  2. no effect
  3. no effect

39 papers more in this group

See all 43 papers →

8 of 12 groups shown: named compounds and organisms first, then groups whose results differ (checked claim by claim), then those with positive and negative results, then the smaller groups.

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.