Paper · 2022 · All Life

The combination of transcriptome and metabolome reveals the molecular mechanism by which topping and salicylic acid treatment affect the synthesis of alkaloids in Nicotiana tabacum L.

Mengyue Zhang; Yuanyuan Zhao; Chunting Yang; et al.

5
claims
9
verbatim quotes
10
citations
2
research areas
✓
Open access · cc-by-nc

Abstract

Topping and salicylic acid (SA) treatment are thought to change nicotine content in Nicotiana tabacum L. (tobacco). This study aimed to investigate the potential underlying molecular mechanisms. Tobacco variety K326 plants were divided into four groups, each receiving only the topping treatment (TW), the topping and 0.6 mM SA treatment (TS), the 0.6 mM SA treatment only (NS), and no treatment (control group, NW). The content of alkaloids and expression of genes related to nicotine synthesis were determined through gas chromatography-hydrogen flame ionization and liquid chromatography mass spectrometry. Differentially expressed and differentially expressed genes (DEGs) were screened and analyzed between different groups. Finally, we constructed a DEG-pathway-differential metabolite network using Cytoscape. While SA treatment decreased the expression of genes related to nicotine synthesis and alkaloid content, topping showed the opposite results: transcriptome and metabolome analyses showed that both changed a variety of biological pathways and related gene expression in tobacco, including arginine and proline metabolism, tropane, piperidine and pyridine alkaloid biosynthesis, nicotinate and nicotinamide metabolism, glutathione metabolism, biotin metabolism, phenylpropanoid biosynthesis, and plant hormone signal transduction. This study provides new insights for understanding how topping and SA treatment affect nicotine content in tobacco and provides a direction for future breeding.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 5

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Salicylic acid decreased expression of nicotine synthesis genes.

Taxon
Nicotiana tabacum L.Nicotiana tabacumt0
Treatment
SA treatmente0
Outcome
expression of genes related to nicotine synthesise0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“SA treatment decreased the expression of genes related to nicotine synthesis and alkaloid content”

✓ located verbatim in the source · abstract, characters 823–920 · show in text ↑
t0

“Nicotiana tabacum L.”

✓ located verbatim in the source · title, characters 163–183 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Salicylic acid decreased alkaloid content.

Taxon
Nicotiana tabacum L.Nicotiana tabacumt0
Treatment
SA treatmente0
Outcome
alkaloid contente0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“SA treatment decreased the expression of genes related to nicotine synthesis and alkaloid content”

✓ located verbatim in the source · abstract, characters 823–920 · show in text ↑
t0

“Nicotiana tabacum L.”

✓ located verbatim in the source · title, characters 163–183 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Topping increased expression of genes related to nicotine synthesis.

Taxon
Nicotiana tabacum L.Nicotiana tabacumt0
Treatment
toppinge0
Outcome
expression of genes related to nicotine synthesise0
Direction
increaseinferrede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“While SA treatment decreased the expression of genes related to nicotine synthesis and alkaloid content, topping showed the opposite results”

✓ located verbatim in the source · abstract, characters 817–957 · show in text ↑
t0

“Nicotiana tabacum L.”

✓ located verbatim in the source · title, characters 163–183 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Topping increased alkaloid content.

Taxon
Nicotiana tabacum L.Nicotiana tabacumt0
Treatment
toppinge0
Outcome
alkaloid contente0
Direction
increaseinferrede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“While SA treatment decreased the expression of genes related to nicotine synthesis and alkaloid content, topping showed the opposite results”

✓ located verbatim in the source · abstract, characters 817–957 · show in text ↑
t0

“Nicotiana tabacum L.”

✓ located verbatim in the source · title, characters 163–183 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Both treatments changed multiple metabolic and signaling pathways and associated tobacco gene expression.

Treatment
bothe0
Outcome
biological pathways and related gene expressione0
Direction
changede0
Qualifier
arginine and proline metabolism, tropane, piperidine and pyridine alkaloid biosynthesis, nicotinate and nicotinamide metabolism, glutathione metabolism, biotin metabolism, phenylpropanoid biosynthesis, and plant hormone signal transductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“transcriptome and metabolome analyses showed that both changed a variety of biological pathways and related gene expression in tobacco, including arginine and proline metabolism, tropane, piperidine and pyridine alkaloid biosynthesis, nicotinate and nicotinamide metabolism, glutathione metabolism, biotin metabolism, phenylpropanoid biosynthesis, and plant hormone signal transduction”

✓ located verbatim in the source · abstract, characters 959–1344 · show in text ↑

salicylic acid · quality: phytochemicals · Nicotiana tabacum (tobacco)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
See all 3 papers →

salicylic acid · molecular: expression · Nicotiana tabacum (tobacco)Positive and negative results

36 papers: 25 positive, 11 negative or no effect

10 papers in the same direction as this paper · 25 in the opposite direction

  1. positive
  2. positive
  3. positive

32 papers more in this group

See all 36 papers →

pruning · quality: phytochemicals · Nicotiana tabacum (tobacco)Positive and negative results

5 papers: 3 positive, 2 negative or no effect

2 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. negative
  3. positive

1 paper more in this group

See all 5 papers →

pruning · molecular: expression · Nicotiana tabacum (tobacco)Positive and negative results

6 papers: 3 positive, 3 negative or no effect

2 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. no effect

2 papers more in this group

See all 6 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.