Paper · 2022 · Biomolecules

Comparative Transcriptome Analysis of Agrobacterium tumefaciens Reveals the Molecular Basis for the Recalcitrant Genetic Transformation of Camellia sinensis L.

Ke Jin; Na Tian; Jorge Freire da Silva Ferreira; et al.

8
claims
13
verbatim quotes
8
citations
4
research areas
✓
Open access · cc-by

Abstract

Tea (Camellia sinensis L.), an important economic crop, is recalcitrant to Agrobacterium-mediated transformation (AMT), which has seriously hindered the progress of molecular research on this species. The mechanisms leading to low efficiency of AMT in tea plants, related to the morphology, growth, and gene expression of Agrobacterium tumefaciens during tea-leaf explant infection, were compared to AMT of Nicotiana benthamiana leaves in the present work. Scanning electron microscopy (SEM) images showed that tea leaves induced significant morphological aberrations on bacterial cells and affected pathogen–plant attachment, the initial step of a successful AMT. RNA sequencing and transcriptomic analysis on Agrobacterium at 0, 3 and 4 days after leaf post-inoculation resulted in 762, 1923 and 1656 differentially expressed genes (DEGs) between the tea group and the tobacco group, respectively. The expressions of genes involved in bacterial fundamental metabolic processes, ATP-binding cassette (ABC) transporters, two-component systems (TCSs), secretion systems, and quorum sensing (QS) systems were severely affected in response to the tea-leaf phylloplane. Collectively, these results suggest that compounds in tea leaves, especially gamma-aminobutyrate (GABA) and catechins, interfered with plant–pathogen attachment, essential minerals (iron and potassium) acquisition, and quorum quenching (QQ) induction, which may have been major contributing factors to hinder AMT efficiency of the tea plant.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Tea leaves induced significant morphological aberrations in bacterial cells.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefaciense1
Treatment
tea leavese0
Interactor
teae0host
Outcome
morphological aberrations on bacterial cellse0
Comparator
Nicotiana benthamiana leavese1

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“tea leaves induced significant morphological aberrations on bacterial cells and affected pathogen–plant attachment”

✓ located verbatim in the source · abstract, characters 511–625 · show in text ↑
e1

“the morphology, growth, and gene expression of Agrobacterium tumefaciens during tea-leaf explant infection, were compared to AMT of Nicotiana benthamiana leaves”

✓ located verbatim in the source · abstract, characters 275–435 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Tea leaves affected pathogen–plant attachment during transformation.

Taxon
teae0
Treatment
Agrobacterium tumefaciense1
Interactor
Agrobacterium tumefaciensAgrobacterium tumefaciense1pathogen
Outcome
pathogen–plant attachmente0
Comparator
Nicotiana benthamiana leavese1

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“tea leaves induced significant morphological aberrations on bacterial cells and affected pathogen–plant attachment”

✓ located verbatim in the source · abstract, characters 511–625 · show in text ↑
e1

“the morphology, growth, and gene expression of Agrobacterium tumefaciens during tea-leaf explant infection, were compared to AMT of Nicotiana benthamiana leaves”

✓ located verbatim in the source · abstract, characters 275–435 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Agrobacterium transcriptomes differed by 762 genes between tea and tobacco groups at day 0.

Taxon
AgrobacteriumAgrobacteriume0
Interactor
teae0host
Outcome
differentially expressed genes (DEGs)e0
Value
762e0
Qualifier
0e0
Comparator
tobacco groupe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium
Agrobacterium · Taxon · picture from its Wikimedia Commons categoryDidierFy · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RNA sequencing and transcriptomic analysis on Agrobacterium at 0, 3 and 4 days after leaf post-inoculation resulted in 762, 1923 and 1656 differentially expressed genes (DEGs) between the tea group and the tobacco group, respectively.”

✓ located verbatim in the source · abstract, characters 665–899 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Agrobacterium transcriptomes differed by 1923 genes between tea and tobacco groups at day 3.

Taxon
AgrobacteriumAgrobacteriume0
Interactor
teae0host
Outcome
differentially expressed genes (DEGs)e0
Value
1923e0
Qualifier
3e0
Comparator
tobacco groupe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium
Agrobacterium · Taxon · picture from its Wikimedia Commons categoryDidierFy · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RNA sequencing and transcriptomic analysis on Agrobacterium at 0, 3 and 4 days after leaf post-inoculation resulted in 762, 1923 and 1656 differentially expressed genes (DEGs) between the tea group and the tobacco group, respectively.”

✓ located verbatim in the source · abstract, characters 665–899 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Agrobacterium transcriptomes differed by 1656 genes between tea and tobacco groups at day 4.

Taxon
AgrobacteriumAgrobacteriume0
Interactor
teae0host
Outcome
differentially expressed genes (DEGs)e0
Value
1656e0
Qualifier
4e0
Comparator
tobacco groupe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium
Agrobacterium · Taxon · picture from its Wikimedia Commons categoryDidierFy · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RNA sequencing and transcriptomic analysis on Agrobacterium at 0, 3 and 4 days after leaf post-inoculation resulted in 762, 1923 and 1656 differentially expressed genes (DEGs) between the tea group and the tobacco group, respectively.”

✓ located verbatim in the source · abstract, characters 665–899 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The tea-leaf phylloplane severely affected expression of bacterial metabolic, ABC transporter and two-component-system genes.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefacienst0
Treatment
tea-leaf phylloplanee0
Interactor
teae0host
Outcome
expressions of genese0
Qualifier
bacterial fundamental metabolic processes, ATP-binding cassette (ABC) transporters, two-component systems (TCSs)e0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The expressions of genes involved in bacterial fundamental metabolic processes, ATP-binding cassette (ABC) transporters, two-component systems (TCSs), secretion systems, and quorum sensing (QS) systems were severely affected in response to the tea-leaf phylloplane.”

✓ located verbatim in the source · abstract, characters 900–1165 · show in text ↑
t0

“Agrobacterium tumefaciens”

✓ located verbatim in the source · title, characters 38–63 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The tea-leaf phylloplane severely affected expression of bacterial secretion and quorum-sensing genes.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefacienst0
Treatment
tea-leaf phylloplanee0
Interactor
teae0host
Outcome
expressions of genese0
Qualifier
secretion systems, and quorum sensing (QS) systemse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The expressions of genes involved in bacterial fundamental metabolic processes, ATP-binding cassette (ABC) transporters, two-component systems (TCSs), secretion systems, and quorum sensing (QS) systems were severely affected in response to the tea-leaf phylloplane.”

✓ located verbatim in the source · abstract, characters 900–1165 · show in text ↑
t0

“Agrobacterium tumefaciens”

✓ located verbatim in the source · title, characters 38–63 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

The authors suggest that tea-leaf GABA and catechins interfere with attachment, mineral acquisition and quorum-quenching induction, potentially hindering transformation efficiency.

Taxon
teae0
Interactor
Agrobacterium tumefaciensAgrobacterium tumefacienst0pathogen
Compound
gamma-aminobutyrate (GABA) and catechinse0
Outcome
AMT efficiencye0
Qualifier
interfered with plant–pathogen attachment, essential minerals (iron and potassium) acquisition, and quorum quenching (QQ) inductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Collectively, these results suggest that compounds in tea leaves, especially gamma-aminobutyrate (GABA) and catechins, interfered with plant–pathogen attachment, essential minerals (iron and potassium) acquisition, and quorum quenching (QQ) induction, which may have been major contributing factors to hinder AMT efficiency of the tea plant.”

✓ located verbatim in the source · abstract, characters 1166–1507 · show in text ↑
t0

“Agrobacterium tumefaciens”

✓ located verbatim in the source · title, characters 38–63 · show in text ↑