Abstract
BACKGROUND: As the king of all herbs, the medicinal value of ginseng is self-evident. The perennial nature of ginseng causes its quality to be influenced by various factors, one of which is the soil environment. During plant growth and development, MYB transcription factors play an important role in responding to abiotic stresses and regulating the synthesis of secondary metabolites. However, there are relatively few reports on the MYB transcription factor family in Panax ginseng. RESULTS: This study identified 420 PgMYB transcripts under 117 genes ID in the Jilin ginseng transcriptome database. Phylogenetic analysis showed that PgMYB transcripts in Jilin ginseng were classified into 19 functional subclasses. The GO annotation result indicated that the functional differentiation of PgMYB transcripts was annotated to 11 functional nodes at GO Level 2 in ginseng. Expression pattern analysis of PgMYB transcripts based on the expression data (TPM) that PgMYB transcripts were revealed spatiotemporally specific in expression patterns. We performed a weighted network co-expression network analysis on the expression of PgMYB transcripts from different samples. The co-expression network containing 51 PgMYB transcripts was formed under a soft threshold of 0.85, revealing the reciprocal relationship of PgMYB in ginseng. Treatment of adventitious roots of ginseng with different concentrations of NaCl revealed four up-regulated expression of PgMYB transcripts that can candidate genes for salt resistance studies in ginseng. CONCLUSIONS: The present findings provide data resources for the subsequent study of the functions of MYB transcription factor family members in ginseng, and provide an experimental basis for the anti-salt functions of MYB transcription factors in Panax ginseng.
Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗
The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.
Claims 6
Claim · model-written summary
The Jilin ginseng transcriptome database contained 420 PgMYB transcripts under 117 gene IDs.
- Taxon
- ginseng
Panax ginsenge0 - Gene
- PgMYBe0
- Outcome
- PgMYB transcriptse0
- Value
- 420 PgMYB transcriptse0
- Setting
- Jiline0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“This study identified 420 PgMYB transcripts under 117 genes ID in the Jilin ginseng transcriptome database.”
Claim · model-written summary
PgMYB transcripts were classified into 19 functional subclasses.
- Taxon
- ginsengPanax ginsenge0
- Gene
- PgMYBe0
- Outcome
- functional subclassese0
- Value
- 19 functional subclassese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Phylogenetic analysis showed that PgMYB transcripts in Jilin ginseng were classified into 19 functional subclasses.”
Claim · model-written summary
GO annotation placed PgMYB functional differentiation at 11 Level 2 functional nodes.
- Taxon
- ginsengPanax ginsenge0
- Gene
- PgMYBe0
- Outcome
- functional nodes at GO Level 2e0
- Value
- 11 functional nodese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“The GO annotation result indicated that the functional differentiation of PgMYB transcripts was annotated to 11 functional nodes at GO Level 2 in ginseng.”
Claim · model-written summary
PgMYB transcript expression patterns were spatiotemporally specific.
- Taxon
- Panax ginsengPanax ginsengt0
- Gene
- PgMYBe0
- Outcome
- spatiotemporally specific in expression patternse0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“PgMYB transcripts were revealed spatiotemporally specific in expression patterns.”
t0“Panax ginseng”
Claim · model-written summary
A co-expression network contained 51 PgMYB transcripts at a soft threshold of 0.85.
- Taxon
- ginsengPanax ginsenge0
- Gene
- PgMYBe0
- Outcome
- co-expression networke0
- Value
- 51 PgMYB transcriptse0
- Qualifier
- soft threshold of 0.85e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“The co-expression network containing 51 PgMYB transcripts was formed under a soft threshold of 0.85, revealing the reciprocal relationship of PgMYB in ginseng.”
Claim · model-written summary
NaCl treatment of ginseng adventitious roots up-regulated four PgMYB transcripts as salt-resistance candidates.
- Taxon
- ginsengPanax ginsenge0
- Organ / stage
- adventitious rootse0
- Treatment
- different concentrations of NaCle0
- Gene
- PgMYBe0
- Outcome
- expression of PgMYB transcriptse0
- Direction
- up-regulatede0
- Value
- foure0
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Treatment of adventitious roots of ginseng with different concentrations of NaCl revealed four up-regulated expression of PgMYB transcripts that can candidate genes for salt resistance studies in ginseng.”
The same questions in other papers
sodium chloride · molecular: expression · Panax ginseng (ginseng)Results agree
1 paper in the same direction as this paper
- positive
Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.