Paper · 2022 · Plant Methods

MGIDI: a powerful tool to analyze plant multivariate data

Tiago Olivoto; Maria I. Diel; Denise Schmidt; et al.

11
claims
17
verbatim quotes
89
citations
3
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Commonly, several traits are assessed in agronomic experiments to better understand the factors under study. However, it is also common to see that even when several traits are available, researchers opt to follow the easiest way by applying univariate analyses and post-hoc tests for mean comparison for each trait, which arouses the hypothesis that the benefits of a multi-trait framework analysis may have not been fully exploited in this area. RESULTS: In this paper, we extended the theoretical foundations of the multi-trait genotype-ideotype distance index (MGIDI) to analyze multivariate data either in simple experiments (e.g., one-way layout with few treatments and traits) or complex experiments (e.g., with a factorial treatment structure). We proposed an optional weighting process that makes the ranking of treatments that stands out in traits with higher weights more likely. Its application is illustrated using (1) simulated data and (2) real data from a strawberry experiment that aims to select better factor combinations (namely, cultivar, transplant origin, and substrate mixture) based on the desired performance of 22 phenological, productive, physiological, and qualitative traits. Our results show that most of the strawberry traits are influenced by the cultivar, transplant origin, cultivation substrates, as well as by the interaction between cultivar and transplant origin. The MGIDI ranked the Albion cultivar originated from Imported transplants and the Camarosa cultivar originated from National transplants as the better factor combinations. The substrates with burned rice husk as the main component (70%) showed satisfactory physical proprieties, providing higher water use efficiency. The strengths and weakness view provided by the MGIDI revealed that looking for an ideal treatment should direct the efforts on increasing fruit production of Albion transplants from Imported origin. On the other hand, this treatment has strengths related to productive precocity, total soluble solids, and flesh firmness. CONCLUSIONS: Overall, this study opens the door to the use of MGIDI beyond the plant breeding context, providing a unique, practical, robust, and easy-to-handle multi-trait-based framework to analyze multivariate data. There is an exciting possibility for this to open up new avenues of research, mainly because using the MGIDI in future studies will dramatically reduce the number of tables/figures needed, serving as a powerful tool to guide researchers toward better treatment recommendations.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 11

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Most of the strawberry traits were influenced by cultivar.

Taxon
strawberryFragaria ×ananassae0
Treatment
cultivare0
Outcome
most of the strawberry traitse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Our results show that most of the strawberry traits are influenced by the cultivar, transplant origin, cultivation substrates, as well as by the interaction between cultivar and transplant origin”

✓ located verbatim in the source · abstract, characters 1218–1413 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Most of the strawberry traits were influenced by transplant origin.

Taxon
strawberryFragaria ×ananassae0
Treatment
transplant origine0
Outcome
most of the strawberry traitse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Our results show that most of the strawberry traits are influenced by the cultivar, transplant origin, cultivation substrates, as well as by the interaction between cultivar and transplant origin”

✓ located verbatim in the source · abstract, characters 1218–1413 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Most of the strawberry traits were influenced by cultivation substrates.

Taxon
strawberryFragaria ×ananassae0
Treatment
cultivation substratese0
Outcome
most of the strawberry traitse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Our results show that most of the strawberry traits are influenced by the cultivar, transplant origin, cultivation substrates, as well as by the interaction between cultivar and transplant origin”

✓ located verbatim in the source · abstract, characters 1218–1413 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Most of the strawberry traits were influenced by the interaction between cultivar and transplant origin.

Taxon
strawberryFragaria ×ananassae0
Treatment
the interaction between cultivar and transplant origine0
Outcome
most of the strawberry traitse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Our results show that most of the strawberry traits are influenced by the cultivar, transplant origin, cultivation substrates, as well as by the interaction between cultivar and transplant origin”

✓ located verbatim in the source · abstract, characters 1218–1413 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The MGIDI ranked the Albion cultivar from Imported transplants as one of the better factor combinations in the strawberry experiment.

Taxon
strawberryFragaria ×ananassae1
Material
Albion cultivare0
Outcome
better factor combinationse0
Qualifier
Imported transplantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The MGIDI ranked the Albion cultivar originated from Imported transplants and the Camarosa cultivar originated from National transplants as the better factor combinations”

✓ located verbatim in the source · abstract, characters 1415–1585 · show in text ↑
e1

“strawberry traits”

✓ located verbatim in the source · abstract, characters 1252–1269 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The MGIDI ranked the Camarosa cultivar from National transplants as one of the better factor combinations in the strawberry experiment.

Taxon
strawberryFragaria ×ananassae1
Material
Camarosa cultivare0
Outcome
better factor combinationse0
Qualifier
National transplantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The MGIDI ranked the Albion cultivar originated from Imported transplants and the Camarosa cultivar originated from National transplants as the better factor combinations”

✓ located verbatim in the source · abstract, characters 1415–1585 · show in text ↑
e1

“strawberry traits”

✓ located verbatim in the source · abstract, characters 1252–1269 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Substrates with burned rice husk as the main component (70%) showed satisfactory physical properties for strawberry.

Taxon
strawberryFragaria ×ananassae1
Treatment
burned rice husk as the main component (70%)e0
Outcome
physical proprietiese0
Qualifier
satisfactorye0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The substrates with burned rice husk as the main component (70%) showed satisfactory physical proprieties, providing higher water use efficiency”

✓ located verbatim in the source · abstract, characters 1587–1731 · show in text ↑
e1

“strawberry traits”

✓ located verbatim in the source · abstract, characters 1252–1269 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Substrates with burned rice husk as the main component (70%) provided higher water use efficiency in strawberry.

Taxon
strawberryFragaria ×ananassae1
Treatment
burned rice husk as the main component (70%)e0
Outcome
water use efficiencye0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The substrates with burned rice husk as the main component (70%) showed satisfactory physical proprieties, providing higher water use efficiency”

✓ located verbatim in the source · abstract, characters 1587–1731 · show in text ↑
e1

“strawberry traits”

✓ located verbatim in the source · abstract, characters 1252–1269 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The Albion-Imported treatment has strengths in productive precocity, total soluble solids and flesh firmness.

Taxon
strawberryFragaria ×ananassae1
Outcome
productive precocity, total soluble solids, and flesh firmnesse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“this treatment has strengths related to productive precocity, total soluble solids, and flesh firmness”

✓ located verbatim in the source · abstract, characters 1952–2054 · show in text ↑
e1

“strawberry traits”

✓ located verbatim in the source · abstract, characters 1252–1269 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Efforts toward an ideal treatment should focus on increasing fruit production of Albion transplants from Imported origin.

Taxon
strawberryFragaria ×ananassae1
Material
Albion transplantse0
Outcome
fruit productione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Fragaria x ananassa
Fragaria ×ananassa · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“looking for an ideal treatment should direct the efforts on increasing fruit production of Albion transplants from Imported origin”

✓ located verbatim in the source · abstract, characters 1801–1931 · show in text ↑
e1

“strawberry traits”

✓ located verbatim in the source · abstract, characters 1252–1269 · show in text ↑
Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

An optional weighting process was proposed for the MGIDI that makes the ranking of treatments standing out in higher-weighted traits more likely.

Outcome
optional weighting processe0

Not reportedComparator

Verbatim

e0

“We proposed an optional weighting process that makes the ranking of treatments that stands out in traits with higher weights more likely”

✓ located verbatim in the source · abstract, characters 765–901 · show in text ↑

Oryza sativa · physiology: water · Fragaria x ananassa (strawberry)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.