Paper · 2023 · Plants

Effectiveness of R1-nj Anthocyanin Marker in the Identification of In Vivo Induced Maize Haploid Embryos

Luis Antonio Lopez; John Ochieng; Mario Pacheco; et al.

6
claims
14
verbatim quotes
6
citations
3
research areas
✓
Open access · cc-by

Abstract

Doubled haploid (DH) technology has become integral to maize breeding programs to expedite inbred line development and increase the efficiency of breeding operations. Unlike many other plant species that use in vitro methods, DH production in maize uses a relatively simple and efficient in vivo haploid induction method. However, it takes two complete crop cycles for DH line generation, one for haploid induction and the other one for chromosome doubling and seed production. Rescuing in vivo induced haploid embryos has the potential to reduce the time for DH line development and improve the efficiency of DH line production. However, the identification of a few haploid embryos (~10%) resulting from an induction cross from the rest of the diploid embryos is a challenge. In this study, we demonstrated that an anthocyanin marker, namely R1-nj, which is integrated into most haploid inducers, can aid in distinguishing haploid and diploid embryos. Further, we tested conditions that enhance R1-nj anthocyanin marker expression in embryos and found that light and sucrose enhance anthocyanin expression, while phosphorous deprivation in the media had no affect. Validating the use of the R1-nj marker for haploid and diploid embryo identification using a gold standard classification based on visual differences among haploids and diploids for characteristics such as seedling vigor, erectness of leaves, tassel fertility, etc., indicated that the R1-nj marker could lead to significantly high false positives, necessitating the use of additional markers for increased accuracy and reliability of haploid embryo identification.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

R1-nj aided distinction of haploid and diploid maize embryos.

Taxon
MaizeZea mayst0
Gene
R1-nje0
Outcome
distinguishing haploid and diploid embryose0
Comparator
diploid embryose0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“an anthocyanin marker, namely R1-nj, which is integrated into most haploid inducers, can aid in distinguishing haploid and diploid embryos.”

✓ located verbatim in the source · abstract, characters 813–952 · show in text ↑
t0

“Maize Haploid Embryos”

✓ located verbatim in the source · title, characters 83–104 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Light enhanced R1-nj anthocyanin expression in embryos.

Taxon
MaizeZea mayst0
Treatment
lighte0
Gene
R1-nje1
Outcome
anthocyanin expressione0
Direction
enhancee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“light and sucrose enhance anthocyanin expression, while phosphorous deprivation in the media had no affect.”

✓ located verbatim in the source · abstract, characters 1058–1165 · show in text ↑
e1

“an anthocyanin marker, namely R1-nj, which is integrated into most haploid inducers, can aid in distinguishing haploid and diploid embryos.”

✓ located verbatim in the source · abstract, characters 813–952 · show in text ↑
t0

“Maize Haploid Embryos”

✓ located verbatim in the source · title, characters 83–104 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Sucrose enhanced anthocyanin expression in embryos.

Taxon
MaizeZea mayst0
Treatment
sucrosee0
Outcome
anthocyanin expressione0
Direction
enhancee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“light and sucrose enhance anthocyanin expression, while phosphorous deprivation in the media had no affect.”

✓ located verbatim in the source · abstract, characters 1058–1165 · show in text ↑
t0

“Maize Haploid Embryos”

✓ located verbatim in the source · title, characters 83–104 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Phosphorous deprivation in the media had no effect on anthocyanin expression.

Taxon
MaizeZea mayst0
Treatment
phosphorous deprivation in the mediae0
Outcome
anthocyanin expressione0
Direction
no affecte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“light and sucrose enhance anthocyanin expression, while phosphorous deprivation in the media had no affect.”

✓ located verbatim in the source · abstract, characters 1058–1165 · show in text ↑
t0

“Maize Haploid Embryos”

✓ located verbatim in the source · title, characters 83–104 · show in text ↑
Method / resourceauthor interpretationoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

R1-nj identification gave significantly high false positives relative to visual classification.

Taxon
MaizeZea mayst0
Gene
R1-nje0
Outcome
false positivese0
Direction
highe0
Comparator
a gold standard classificatione1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the R1-nj marker could lead to significantly high false positives, necessitating the use of additional markers for increased accuracy and reliability of haploid embryo identification.”

✓ located verbatim in the source · abstract, characters 1448–1631 · show in text ↑
e1

“a gold standard classification based on visual differences among haploids and diploids”

✓ located verbatim in the source · abstract, characters 1257–1343 · show in text ↑
t0

“Maize Haploid Embryos”

✓ located verbatim in the source · title, characters 83–104 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors concluded that additional markers are needed for more accurate and reliable haploid embryo identification.

Taxon
MaizeZea mayst0
Outcome
use of additional markerse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“necessitating the use of additional markers for increased accuracy and reliability of haploid embryo identification.”

✓ located verbatim in the source · abstract, characters 1515–1631 · show in text ↑
t0

“Maize Haploid Embryos”

✓ located verbatim in the source · title, characters 83–104 · show in text ↑

sucrose · molecular: expression · Zea mays (maize)Positive and negative results

8 papers: 6 positive, 2 negative or no effect

5 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. no effect
  3. positive

4 papers more in this group

See all 8 papers →

in vitro · molecular: expression · Zea mays (maize)Positive and negative results

8 papers: 5 positive, 3 negative or no effect

2 papers in the same direction as this paper · 5 in the opposite direction

  1. positive
  2. positive
  3. positive

4 papers more in this group

See all 8 papers →

light · molecular: expression · Zea mays (maize)Positive and negative results

30 papers: 18 positive, 12 negative or no effect

17 papers in the same direction as this paper · 11 in the opposite direction · 1 reporting no difference from an alternative

  1. positive
  2. no effect
  3. no effect

26 papers more in this group

See all 30 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.