Paper · 2023 · Frontiers in Plant Science

Transcriptomic analysis in tomato fruit reveals divergences in genes involved in cold stress response and fruit ripening

Oscar W. Mitalo; Seung Won Kang; Long T. Tran; et al.

11
claims
22
verbatim quotes
13
citations
2
research areas
✓
Open access · cc-by

Abstract

Cold storage is widely used to extend the postharvest life of most horticultural crops, including tomatoes, but this practice triggers cold stress and leads to the development of undesirable chilling injury (CI) symptoms. The underlying mechanisms of cold stress response and CI development in fruits remain unclear as they are often intermingled with fruit ripening changes. To gain insight into cold responses in fruits, we examined the effect of the potent ethylene signaling inhibitor 1-methylcyclopropene (1-MCP) on fruit ripening, CI occurrence and gene expression in mature green tomatoes during storage at 20°C and 5°C. 1-MCP treatments effectively inhibited ethylene production and peel color changes during storage at 20°C. Storage at 5°C also inhibited both ethylene production and peel color change; during rewarming at 20°C, 1-MCP treatments inhibited peel color change but failed to inhibit ethylene production. Furthermore, fruits stored at 5°C for 14 d developed CI symptoms (surface pitting and decay) during the rewarming period at 20°C regardless of 1-MCP treatment. Subsequent RNA-Seq analysis revealed that cold stress triggers a large-scale transcriptomic adjustment, as noticeably more genes were differentially expressed at 5°C (8,406) than at 20°C (4,814). More importantly, we have found some important divergences among genes involved in fruit ripening (up- or down-regulated at 20°C; inhibited by 1-MCP treatment) and those involved in cold stress (up- or down-regulated at 5°C; unaffected by 1-MCP treatment). Transcriptomic adjustments unique to cold stress response were associated with ribosome biogenesis, NcRNA metabolism, DNA methylation, chromatin formation/remodeling, and alternative splicing events. These data should foster further research into cold stress response mechanisms in fruits with the ultimate aim of improving tolerance to low temperature and reduction of CI symptoms during cold storage.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

1-MCP inhibited tomato fruit ethylene production during storage at 20°C.

Treatment
1-MCP treatmentse0
Outcome
ethylene productione0
Direction
inhibitede0
Setting
20°Ce0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“1-MCP treatments effectively inhibited ethylene production and peel color changes during storage at 20°C”

✓ located verbatim in the source · abstract, characters 628–732 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

1-MCP inhibited tomato fruit peel color changes during storage at 20°C.

Treatment
1-MCP treatmentse0
Outcome
peel color changese0
Direction
inhibitede0
Setting
20°Ce0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“1-MCP treatments effectively inhibited ethylene production and peel color changes during storage at 20°C”

✓ located verbatim in the source · abstract, characters 628–732 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Storage at 5°C inhibited tomato ethylene production.

Treatment
Storage at 5°Ce0
Outcome
ethylene productione0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Storage at 5°C also inhibited both ethylene production and peel color change”

✓ located verbatim in the source · abstract, characters 734–810 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Storage at 5°C inhibited tomato peel color change.

Treatment
Storage at 5°Ce0
Outcome
peel color changee0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Storage at 5°C also inhibited both ethylene production and peel color change”

✓ located verbatim in the source · abstract, characters 734–810 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

During rewarming, 1-MCP inhibited tomato peel color change.

Treatment
1-MCP treatmentse0
Outcome
peel color changee0
Direction
inhibitede0
Setting
20°Ce0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“during rewarming at 20°C, 1-MCP treatments inhibited peel color change”

✓ located verbatim in the source · abstract, characters 812–882 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

During rewarming, 1-MCP failed to inhibit tomato ethylene production.

Treatment
1-MCP treatmentse0
Outcome
ethylene productione0
Direction
failed to inhibite0
Setting
20°Ce0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“during rewarming at 20°C, 1-MCP treatments inhibited peel color change but failed to inhibit ethylene production”

✓ located verbatim in the source · abstract, characters 812–924 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Tomato fruit stored at 5°C for 14 days developed chilling injury during rewarming regardless of 1-MCP.

Treatment
1-MCP treatmente0
Outcome
CI symptoms (surface pitting and decay)e0
Qualifier
stored at 5°C for 14 de0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“fruits stored at 5°C for 14 d developed CI symptoms (surface pitting and decay) during the rewarming period at 20°C regardless of 1-MCP treatment”

✓ located verbatim in the source · abstract, characters 939–1084 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

More tomato genes were differentially expressed at 5°C, 8,406, than at 20°C, 4,814.

Outcome
genes were differentially expressede0
Direction
moree0
Value
8,406e0
Qualifier
4,814e0
Comparator
20°Ce0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“more genes were differentially expressed at 5°C (8,406) than at 20°C (4,814)”

✓ located verbatim in the source · abstract, characters 1204–1280 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Tomato ripening genes regulated at 20°C were inhibited by 1-MCP, whereas cold-stress genes regulated at 5°C were unaffected.

Treatment
1-MCP treatmente0
Outcome
genes involved in fruit ripeninge0
Direction
inhibitede0
Comparator
those involved in cold stresse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“genes involved in fruit ripening (up- or down-regulated at 20°C; inhibited by 1-MCP treatment) and those involved in cold stress (up- or down-regulated at 5°C; unaffected by 1-MCP treatment)”

✓ located verbatim in the source · abstract, characters 1347–1537 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Cold-specific transcriptomic changes were associated with ribosome biogenesis, NcRNA metabolism and DNA methylation.

Treatment
cold stress responsee0
Outcome
Transcriptomic adjustments unique to cold stress responsee0
Qualifier
ribosome biogenesis, NcRNA metabolism, DNA methylatione0

Not reportedOrgan / stageDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Transcriptomic adjustments unique to cold stress response were associated with ribosome biogenesis, NcRNA metabolism, DNA methylation, chromatin formation/remodeling, and alternative splicing events”

✓ located verbatim in the source · abstract, characters 1539–1737 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Cold-specific transcriptomic changes were associated with chromatin remodeling and alternative splicing.

Treatment
cold stress responsee0
Outcome
Transcriptomic adjustments unique to cold stress responsee0
Qualifier
chromatin formation/remodeling, and alternative splicing eventse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Transcriptomic adjustments unique to cold stress response were associated with ribosome biogenesis, NcRNA metabolism, DNA methylation, chromatin formation/remodeling, and alternative splicing events”

✓ located verbatim in the source · abstract, characters 1539–1737 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 27–33 · show in text ↑

1-methylcyclopropene · physiology: hormones · Solanum lycopersicum (tomato)Results differ

23 papers: 20 positive, 3 negative or no effect

19 papers in the same direction as this paper · 3 in the opposite direction

  1. no effect
  2. negative
  3. no effect

19 papers more in this group

See all 23 papers →

1-methylcyclopropene · quality: postharvest · Solanum lycopersicum (tomato)Results agree

53 papers: 53 positive, 0 negative or no effect

52 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

49 papers more in this group

See all 53 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.