Paper · 2024 · Agronomy

Combined Application of High-Throughput Sequencing and Metabolomics to Evaluate the Microbial Mechanisms of Plant-Growth-Promoting Bacteria in Enhancing the Remediation of Cd-Contaminated Soil by Hybrid Pennisetum

Shan-Shan Gao; Ying-Jun Zhang; Yang Shao; et al.

15
claims
34
verbatim quotes
5
citations
2
research areas
✓
Open access · cc-by

Abstract

The contamination of soil with the heavy metal cadmium (Cd) is increasingly prominent and severely threatens food security in China. Owing to its low cost, suitable efficacy, and ability to address the shortcomings of plant remediation by enhancing the ability of plants to take up Cd, plant–microbe combination remediation technology has become a research hotspot in heavy metal pollution remediation. A pot experiment was performed to examine the effects of inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9 on the biomass, Cd accumulation, and soil nutrients of hybrid Pennisetum. The purpose of this study was to determine how Brevibacillus sp. SR-9 alleviates stress caused by heavy metal contamination. High-throughput sequencing and metabolomics were used to determine the effects of inoculation on the soil bacterial community composition and microbial metabolic functions associated with hybrid Pennisetum. The results suggest that mutation of Brevibacillus sp. SR-9 effectively alleviates Cd pollution stress, leading to increased biomass and accumulation of Cd in hybrid Pennisetum. The aboveground biomass and the root weight increased by 12.08% and 27.03%, respectively. Additionally, the accumulation of Cd in the aboveground sections and roots increased by 21.16% and 15.50%, respectively. Measurements of the physicochemical properties of the soil revealed that the strain Brevibacillus sp. SR-9 slightly increased the levels of available phosphorus, total nitrogen, total phosphorus, and available potassium. High-throughput DNA sequencing revealed that Brevibacillus sp. SR-9 implantation modified the composition of the soil bacterial community by increasing the average number of Actinobacteria and Bacillus. The total nitrogen content of the soil was positively correlated with the Actinobacteria abundance, total phosphorus level, and available phosphorus level. Metabolomic analysis revealed that inoculation affected the abundance of soil metabolites, and 59 differentially abundant metabolites were identified (p < 0.05). Among these, 14 metabolites presented increased abundance, whereas 45 metabolites presented decreased abundance. Fourteen metabolic pathways were enriched in these metabolites: the folate resistance pathway, the ABC transporter pathway, D-glutamine and D-glutamic acid metabolism, purine metabolism, and pyrimidine metabolism. The abundance of the metabolites was positively correlated with the levels of available phosphorus, total potassium, total phosphorus, and total nitrogen. According to correlation analyses, the development of hybrid Pennisetum and the accumulation of Cd are strongly associated with differentially abundant metabolites, which also impact the abundance of certain bacterial populations. This work revealed that by altering the makeup of microbial communities and their metabolic processes, bacteria that promote plant development can mitigate the stress caused by Cd. These findings reveal the microbiological mechanisms through which these bacteria increase the ability of hybrid Pennisetum to take up the Cd present in contaminated soils.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 15

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with Brevibacillus sp. SR-9 increased aboveground biomass of hybrid Pennisetum by 12.08%.

Taxon
hybrid PennisetumPennisetumt0
Treatment
inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9e1
Interactor
Brevibacillus sp. SR-9e1other
Outcome
aboveground biomasse0
Direction
increasede0
Value
12.08%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“The aboveground biomass and the root weight increased by 12.08% and 27.03%, respectively”

✓ located verbatim in the source · abstract, characters 1121–1209 · show in text ↑
e1

“inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9”

✓ located verbatim in the source · abstract, characters 460–536 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation with Brevibacillus sp. SR-9 increased root weight of hybrid Pennisetum by 27.03%.

Taxon
hybrid PennisetumPennisetumt0
Treatment
inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9e1
Interactor
Brevibacillus sp. SR-9e1other
Outcome
root weighte0
Direction
increasede0
Value
27.03%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“The aboveground biomass and the root weight increased by 12.08% and 27.03%, respectively”

✓ located verbatim in the source · abstract, characters 1121–1209 · show in text ↑
e1

“inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9”

✓ located verbatim in the source · abstract, characters 460–536 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation increased Cd accumulation in aboveground sections of hybrid Pennisetum by 21.16%.

Taxon
hybrid PennisetumPennisetumt0
Treatment
inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9e1
Interactor
Brevibacillus sp. SR-9e1other
Outcome
accumulation of Cd in the aboveground sectionse0
Direction
increasede0
Value
21.16%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“the accumulation of Cd in the aboveground sections and roots increased by 21.16% and 15.50%, respectively”

✓ located verbatim in the source · abstract, characters 1225–1330 · show in text ↑
e1

“inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9”

✓ located verbatim in the source · abstract, characters 460–536 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Inoculation increased Cd accumulation in roots of hybrid Pennisetum by 15.50%.

Taxon
hybrid PennisetumPennisetumt0
Treatment
inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9e1
Interactor
Brevibacillus sp. SR-9e1other
Outcome
accumulation of Cd in the aboveground sections and rootse0
Direction
increasede0
Value
15.50%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“the accumulation of Cd in the aboveground sections and roots increased by 21.16% and 15.50%, respectively”

✓ located verbatim in the source · abstract, characters 1225–1330 · show in text ↑
e1

“inoculation with the plant-growth-promoting bacterium Brevibacillus sp. SR-9”

✓ located verbatim in the source · abstract, characters 460–536 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The strain slightly increased soil available phosphorus, total nitrogen and total phosphorus.

Taxon
hybrid PennisetumPennisetumt0
Treatment
Brevibacillus sp. SR-9e0
Outcome
available phosphorus, total nitrogen, total phosphoruse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“the strain Brevibacillus sp. SR-9 slightly increased the levels of available phosphorus, total nitrogen, total phosphorus, and available potassium”

✓ located verbatim in the source · abstract, characters 1405–1551 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

The strain slightly increased soil available potassium.

Taxon
hybrid PennisetumPennisetumt0
Treatment
Brevibacillus sp. SR-9e0
Outcome
available potassiume0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“the strain Brevibacillus sp. SR-9 slightly increased the levels of available phosphorus, total nitrogen, total phosphorus, and available potassium”

✓ located verbatim in the source · abstract, characters 1405–1551 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Brevibacillus sp. SR-9 implantation modified the soil bacterial community composition by increasing the average number of Actinobacteria and Bacillus.

Taxon
hybrid PennisetumPennisetumt0
Treatment
Brevibacillus sp. SR-9 implantatione0
Interactor
ActinobacteriaActinomycetotae0other
Outcome
average number of Actinobacteria and Bacilluse0
Direction
increasinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“Brevibacillus sp. SR-9 implantation modified the composition of the soil bacterial community by increasing the average number of Actinobacteria and Bacillus”

✓ located verbatim in the source · abstract, characters 1598–1754 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Soil total nitrogen content was positively correlated with Actinobacteria abundance, total phosphorus and available phosphorus.

Taxon
hybrid PennisetumPennisetumt0
Interactor
ActinobacteriaActinomycetotae0other
Outcome
total nitrogen content of the soile0
Direction
positively correlatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“The total nitrogen content of the soil was positively correlated with the Actinobacteria abundance, total phosphorus level, and available phosphorus level”

✓ located verbatim in the source · abstract, characters 1756–1910 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Inoculation affected soil metabolite abundance, with 59 differentially abundant metabolites identified (p < 0.05).

Taxon
hybrid PennisetumPennisetumt0
Treatment
inoculatione0
Outcome
abundance of soil metabolitese0
Value
59e0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“inoculation affected the abundance of soil metabolites, and 59 differentially abundant metabolites were identified (p < 0.05)”

✓ located verbatim in the source · abstract, characters 1947–2072 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the 59 differentially abundant metabolites, 14 showed increased abundance.

Taxon
hybrid PennisetumPennisetumt0
Outcome
metabolites presented increased abundancee0
Value
14e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“14 metabolites presented increased abundance”

✓ located verbatim in the source · abstract, characters 2087–2131 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Of the 59 differentially abundant metabolites, 45 showed decreased abundance.

Taxon
hybrid PennisetumPennisetumt0
Outcome
metabolites presented decreased abundancee0
Value
45e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“45 metabolites presented decreased abundance”

✓ located verbatim in the source · abstract, characters 2141–2185 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fourteen metabolic pathways were enriched in the differentially abundant metabolites.

Taxon
hybrid PennisetumPennisetumt0
Outcome
metabolic pathways were enrichede0
Value
Fourteene0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“Fourteen metabolic pathways were enriched in these metabolites”

✓ located verbatim in the source · abstract, characters 2187–2249 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The abundance of the metabolites was positively correlated with soil available phosphorus, total potassium, total phosphorus and total nitrogen.

Taxon
hybrid PennisetumPennisetumt0
Compound
available phosphorus, total potassium, total phosphorus, and total nitrogene0
Outcome
abundance of the metabolitese0
Direction
positively correlatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“The abundance of the metabolites was positively correlated with the levels of available phosphorus, total potassium, total phosphorus, and total nitrogen”

✓ located verbatim in the source · abstract, characters 2401–2554 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Development of hybrid Pennisetum and Cd accumulation were strongly associated with differentially abundant metabolites, which also affect the abundance of certain bacterial populations.

Taxon
hybrid PennisetumPennisetumt0
Compound
differentially abundant metabolitese0
Outcome
development of hybrid Pennisetum and the accumulation of Cde0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“the development of hybrid Pennisetum and the accumulation of Cd are strongly associated with differentially abundant metabolites”

✓ located verbatim in the source · abstract, characters 2591–2719 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors conclude that plant-growth-promoting bacteria mitigate Cd stress by altering the makeup of microbial communities and their metabolic processes.

Taxon
hybrid PennisetumPennisetumt0
Outcome
mitigate the stress caused by Cde0
Qualifier
altering the makeup of microbial communities and their metabolic processese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Hybrid Pennisetum”

✓ located verbatim in the source · title, characters 196–213 · show in text ↑
e0

“by altering the makeup of microbial communities and their metabolic processes, bacteria that promote plant development can mitigate the stress caused by Cd”

✓ located verbatim in the source · abstract, characters 2811–2966 · show in text ↑

inoculation · growth · PennisetumResults agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

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  2. positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.