Paper · 2025 · Plant Stress

The integrated multi-omics analysis unravels distinct roles of Malvaceae-derived protein hydrolysate and its molecular fraction in modulating tomato resilience under limited nitrogen availability

Sonia Monterisi; Monica Yorlady Alzate Zuluaga; Biancamaria Senizza; et al.

5
claims
13
verbatim quotes
6
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

• Malvaceae -based biostimulant enhanced photosynthesis and stress response genes. • Malvaceae -based biostimulant in low N increased fatty acids, amino acids, phenolics. • Whole and fractionated biostimulant modulated hormone pathways and circadian rhythms. • Whole and fractionated biostimulant improve plant adaptation to suboptimal N levels. Nitrogen (N) is essential for plant growth, yet its limited availability challenges crop development. Protein hydrolysates (PHs) from plant sources are biostimulants that can enhance nutrient use efficiency and stress tolerance in crops, although their mode of action, depending on the botanical origin and the molecular fraction, is largely unknown. This study investigated the molecular effects of a Malvaceae -based pH (C) and its medium molecular weight fraction (F2) on tomato plants under optimal and suboptimal N conditions. Plants were foliarly-treated with C, F2, or left untreated, and analysed using integrated omics techniques. Under optimal N conditions, C upregulated genes associated with photosynthesis, aging, and abiotic stress responses, suggesting enhanced metabolism and resilience. Both C and F2 modulated genes involved in hormone signalling, particularly auxin and cytokinin, and Circadian rhythm pathways. Under suboptimal N, C influenced hormone signalling and light response genes, potentially alleviating N deficiency stress. Metabolomic analysis showed that under low N, C increased fatty acids, amino acids, and phenolic compounds linked to stress protection, while F2 had a milder effect. Multi-omics analysis showed that C impacted N metabolism upregulating nitrate transporters (NRT1) and promoting metabolic reprogramming, whereas F2 primarily influenced hormonal signalling and Circadian rhythm . Overall, C might be more effective than F2 in optimizing N use efficiency. Our study demonstrates that Malvaceae -based PHs can modulate gene expression and metabolism in tomato plants under suboptimal N level, enhancing adaptation to N shortage. However, further research is needed to elucidate the mode of action of PHs in N metabolism.

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Claims 5

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under optimal N, the Malvaceae-based protein hydrolysate upregulated tomato genes for photosynthesis, aging and abiotic stress responses.

Treatment
Malvaceae -based pH (C)e0
Outcome
genes associated with photosynthesis, aging, and abiotic stress responsese2
Direction
upregulatede2
Qualifier
Under optimal N conditionse2
Comparator
untreatede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“This study investigated the molecular effects of a Malvaceae -based pH (C) and its medium molecular weight fraction (F2) on tomato plants under optimal and suboptimal N conditions”

✓ located verbatim in the source · abstract, characters 697–876 · show in text ↑
e1

“Plants were foliarly-treated with C, F2, or left untreated”

✓ located verbatim in the source · abstract, characters 878–936 · show in text ↑
e2

“Under optimal N conditions, C upregulated genes associated with photosynthesis, aging, and abiotic stress responses”

✓ located verbatim in the source · abstract, characters 986–1101 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under low N, the Malvaceae-based protein hydrolysate increased fatty acids, amino acids and phenolic compounds in tomato.

Treatment
Malvaceae -based pH (C)e0
Outcome
fatty acids, amino acids, and phenolic compoundse3
Direction
increasede3
Qualifier
under low Ne3
Comparator
untreatede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“This study investigated the molecular effects of a Malvaceae -based pH (C) and its medium molecular weight fraction (F2) on tomato plants under optimal and suboptimal N conditions”

✓ located verbatim in the source · abstract, characters 697–876 · show in text ↑
e1

“Plants were foliarly-treated with C, F2, or left untreated”

✓ located verbatim in the source · abstract, characters 878–936 · show in text ↑
e3

“Metabolomic analysis showed that under low N, C increased fatty acids, amino acids, and phenolic compounds linked to stress protection, while F2 had a milder effect”

✓ located verbatim in the source · abstract, characters 1400–1564 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Under low N, the F2 fraction had a milder effect on tomato metabolites than the whole hydrolysate.

Treatment
F2e3
Outcome
effecte3
Direction
mildere3
Qualifier
under low Ne3
Comparator
Ce3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“This study investigated the molecular effects of a Malvaceae -based pH (C) and its medium molecular weight fraction (F2) on tomato plants under optimal and suboptimal N conditions”

✓ located verbatim in the source · abstract, characters 697–876 · show in text ↑
e3

“Metabolomic analysis showed that under low N, C increased fatty acids, amino acids, and phenolic compounds linked to stress protection, while F2 had a milder effect”

✓ located verbatim in the source · abstract, characters 1400–1564 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The hydrolysate upregulated tomato nitrate transporter NRT1 expression.

Treatment
Malvaceae -based pH (C)e0
Gene
NRT1e4
Outcome
nitrate transporterse4
Direction
upregulatinge4
Comparator
untreatede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“This study investigated the molecular effects of a Malvaceae -based pH (C) and its medium molecular weight fraction (F2) on tomato plants under optimal and suboptimal N conditions”

✓ located verbatim in the source · abstract, characters 697–876 · show in text ↑
e1

“Plants were foliarly-treated with C, F2, or left untreated”

✓ located verbatim in the source · abstract, characters 878–936 · show in text ↑
e4

“Multi-omics analysis showed that C impacted N metabolism upregulating nitrate transporters (NRT1)”

✓ located verbatim in the source · abstract, characters 1566–1663 · show in text ↑
Intervention effectauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The whole hydrolysate may be more effective than F2 in optimizing N use efficiency in tomato.

Treatment
Ce5
Outcome
N use efficiencye5
Direction
more effectivee5
Comparator
F2e5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“This study investigated the molecular effects of a Malvaceae -based pH (C) and its medium molecular weight fraction (F2) on tomato plants under optimal and suboptimal N conditions”

✓ located verbatim in the source · abstract, characters 697–876 · show in text ↑
e5

“Overall, C might be more effective than F2 in optimizing N use efficiency”

✓ located verbatim in the source · abstract, characters 1778–1851 · show in text ↑

ph · nutrient: content · Solanum lycopersicum (tomato)Positive and negative results

9 papers: 7 positive, 2 negative or no effect

6 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. no effect
  3. no effect

5 papers more in this group

See all 9 papers →

ph · molecular: expression · Solanum lycopersicum (tomato)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.