Paper · 2025 · Plant Growth Regulation

Mitigating chromium toxicity in rice (Oryza sativa L.) via PGPR: insights into rhizosphere microbiome, antioxidants and oxidative stress responses

Arwa Abdulkreem AL-Huqail; Rana M. Alshegaihi; Muna Abdul-Rahman Al-Malki; et al.

17
claims
31
verbatim quotes
7
citations
2
research areas
✓
Open access · cc-by

Abstract

Abstract Tannery wastewater is a major environmental pollutant that introduces toxic compounds, including chromium (Cr), into agricultural soils, posing significant challenges to plant growth and productivity. This research uniquely evaluates the efficacy of three specific plant growth-promoting rhizobacteria (PGPR)— Paenibacillus polymyxa , Bacillus amyloliquefaciens , and Pseudomonas putida —for mitigating Cr stress in rice ( Oryza sativa L.). In this study, O. sativa plants were exposed to different levels of tannery wastewater (0%, 50%, and 100%) in a controlled pot experiment to assess the impact of P. polymyxa , B. amyloliquefaciens and P. putida on various morpho-physio-biochemical traits. Results from the present study revealed that the Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight, chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid content, net photosynthesis, stomatal conductance, transpiration rate, soluble sugar, reducing sugar, non-reducing sugar contents, calcium (Ca 2+ ), magnesium (Mg 2+ ), iron (Fe 2+ ), and phosphorus (P) contents in the plants. However, Cr stress also induced oxidative stress in the plants by increasing malondialdehyde (MDA) and hydrogen peroxide (H 2 O 2 ), which also led to an increase in various enzymatic and nonenzymatic antioxidants and also the gene expression and sugar content. Furthermore, a significant ( P < 0.05) increase in proline metabolism, the AsA–GSH cycle, and the pigmentation of cellular components was observed. Addition of P. polymyxa , B. amyloliquefaciens and P. putide into the soil significantly alleviated Cr toxicity effects on O. sativa by improving photosynthetic capacity and ultimately plant growth. Increased activities of antioxidant enzymes in organic acid and PGPRs-treated plants seem to play a role in capturing stress-induced reactive oxygen species as was evident from lower levels of MDA and H 2 O 2 . Moreover, the application of different PGPRs enhanced both the abundance and diversity of the rhizosphere microbiome, with bacterial population levels and Shannon diversity indices significantly increasing. A marked reduction in daily Cr intake and associated health risks was also observed under these treatments, and proteomic responses under Cr stress. Research findings, therefore, suggested that the application of PGPRs can ameliorate Cr toxicity in O. sativa seedlings and resulted in improved plant growth and composition under metal stress.

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Claims 17

Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced rice shoot and root growth and leaf traits.

Treatment
Cr toxicitye0
Outcome
shoot length, root length, number of leavese0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight”

✓ located verbatim in the source · abstract, characters 755–929 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced rice shoot and root biomass.

Treatment
Cr toxicitye0
Outcome
shoot fresh weight, root fresh weight, shoot dry weighte0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight”

✓ located verbatim in the source · abstract, characters 755–929 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced rice pigments.

Treatment
Cr toxicitye0
Outcome
chlorophyll-a, chlorophyll-b, total chlorophylle0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight, chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid content”

✓ located verbatim in the source · abstract, characters 755–998 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced rice gas exchange.

Treatment
Cr toxicitye0
Outcome
net photosynthesis, stomatal conductance, transpiration ratee0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight, chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid content, net photosynthesis, stomatal conductance, transpiration rate”

✓ located verbatim in the source · abstract, characters 755–1060 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced rice sugar contents.

Treatment
Cr toxicitye0
Outcome
soluble sugar, reducing sugar, non-reducing sugar contentse0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight, chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid content, net photosynthesis, stomatal conductance, transpiration rate, soluble sugar, reducing sugar, non-reducing sugar contents”

✓ located verbatim in the source · abstract, characters 755–1120 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced calcium, magnesium and iron contents.

Treatment
Cr toxicitye0
Outcome
calcium (Ca 2+ ), magnesium (Mg 2+ ), iron (Fe 2+ )e0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight, chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid content, net photosynthesis, stomatal conductance, transpiration rate, soluble sugar, reducing sugar, non-reducing sugar contents, calcium (Ca 2+ ), magnesium (Mg 2+ ), iron (Fe 2+ )”

✓ located verbatim in the source · abstract, characters 755–1173 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium toxicity reduced phosphorus content.

Treatment
Cr toxicitye0
Outcome
phosphorus (P) contentse0
Direction
decreasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr toxicity induced a substantial decrease in shoot length, root length, number of leaves, leaf area, shoot fresh weight, root fresh weight, shoot dry weight, root dry weight, chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid content, net photosynthesis, stomatal conductance, transpiration rate, soluble sugar, reducing sugar, non-reducing sugar contents, calcium (Ca 2+ ), magnesium (Mg 2+ ), iron (Fe 2+ ), and phosphorus (P) contents in the plants”

✓ located verbatim in the source · abstract, characters 755–1216 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium stress increased malondialdehyde and hydrogen peroxide.

Treatment
Cr stresse0
Outcome
malondialdehyde (MDA) and hydrogen peroxide (H 2 O 2 )e0
Direction
increasinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr stress also induced oxidative stress in the plants by increasing malondialdehyde (MDA) and hydrogen peroxide (H 2 O 2 )”

✓ located verbatim in the source · abstract, characters 1227–1349 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium stress increased enzymatic and nonenzymatic antioxidants.

Treatment
Cr stresse0
Outcome
enzymatic and nonenzymatic antioxidantse0
Direction
increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr stress also induced oxidative stress in the plants by increasing malondialdehyde (MDA) and hydrogen peroxide (H 2 O 2 ), which also led to an increase in various enzymatic and nonenzymatic antioxidants”

✓ located verbatim in the source · abstract, characters 1227–1431 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chromium stress increased gene expression and sugar content.

Treatment
Cr stresse0
Outcome
gene expression and sugar contente0
Direction
increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr stress also induced oxidative stress in the plants by increasing malondialdehyde (MDA) and hydrogen peroxide (H 2 O 2 ), which also led to an increase in various enzymatic and nonenzymatic antioxidants and also the gene expression and sugar content”

✓ located verbatim in the source · abstract, characters 1227–1478 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Proline metabolism, the AsA–GSH cycle and cellular pigmentation increased significantly.

Outcome
proline metabolism, the AsA–GSH cycle, and the pigmentation of cellular componentse0
Direction
increasee0
Value
P < 0.05e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“a significant ( P < 0.05) increase in proline metabolism, the AsA–GSH cycle, and the pigmentation of cellular components was observed”

✓ located verbatim in the source · abstract, characters 1493–1626 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Paenibacillus polymyxa alleviated chromium toxicity by improving photosynthesis and growth.

Taxon
O. sativaOryza sativae0
Treatment
P. polymyxae0
Interactor
P. polymyxaPaenibacillus polymyxae0symbiont
Outcome
photosynthetic capacity and ultimately plant growthe0
Direction
improvinge0
Comparator
Cr toxicitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Paenibacillus polymyxa
Paenibacillus polymyxa · InteractorDr. W.A. Clark · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Addition of P. polymyxa , B. amyloliquefaciens and P. putide into the soil significantly alleviated Cr toxicity effects on O. sativa by improving photosynthetic capacity and ultimately plant growth”

✓ located verbatim in the source · abstract, characters 1628–1825 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Bacillus amyloliquefaciens alleviated chromium toxicity by improving photosynthesis and growth.

Taxon
O. sativaOryza sativae0
Treatment
B. amyloliquefaciense0
Interactor
B. amyloliquefaciensBacillus amyloliquefaciense0symbiont
Outcome
photosynthetic capacity and ultimately plant growthe0
Direction
improvinge0
Comparator
Cr toxicitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Bacillus amyloliquefaciens
Bacillus amyloliquefaciens · InteractorAgricultural Research Service (NRRL)Culture Collection · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Addition of P. polymyxa , B. amyloliquefaciens and P. putide into the soil significantly alleviated Cr toxicity effects on O. sativa by improving photosynthetic capacity and ultimately plant growth”

✓ located verbatim in the source · abstract, characters 1628–1825 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Pseudomonas putida alleviated chromium toxicity by improving photosynthesis and growth.

Taxon
O. sativaOryza sativae0
Treatment
P. putidee0
Interactor
P. putidee0symbiont
Outcome
photosynthetic capacity and ultimately plant growthe0
Direction
improvinge0
Comparator
Cr toxicitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Addition of P. polymyxa , B. amyloliquefaciens and P. putide into the soil significantly alleviated Cr toxicity effects on O. sativa by improving photosynthetic capacity and ultimately plant growth”

✓ located verbatim in the source · abstract, characters 1628–1825 · show in text ↑
Associationauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Antioxidant enzyme activity was higher in treated plants and was linked by the authors to lower MDA and hydrogen peroxide.

Treatment
PGPRs-treated plantse0
Outcome
activities of antioxidant enzymese0
Direction
Increasede0
Qualifier
lower levels of MDA and H 2 O 2e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Increased activities of antioxidant enzymes in organic acid and PGPRs-treated plants seem to play a role in capturing stress-induced reactive oxygen species as was evident from lower levels of MDA and H 2 O 2”

✓ located verbatim in the source · abstract, characters 1827–2035 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

PGPR application increased rhizosphere bacterial abundance and diversity.

Treatment
different PGPRse0
Interactor
PGPRse0symbiont
Outcome
abundance and diversity of the rhizosphere microbiomee0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“application of different PGPRs enhanced both the abundance and diversity of the rhizosphere microbiome, with bacterial population levels and Shannon diversity indices significantly increasing”

✓ located verbatim in the source · abstract, characters 2052–2243 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Daily chromium intake and associated health risks declined under the treatments.

Treatment
these treatmentse0
Outcome
daily Cr intake and associated health riskse0
Direction
reductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“A marked reduction in daily Cr intake and associated health risks was also observed under these treatments”

✓ located verbatim in the source · abstract, characters 2245–2351 · show in text ↑
t0

“rice (Oryza sativa L.)”

✓ located verbatim in the source · title, characters 32–54 · show in text ↑